Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 0.0e+00 1096.3 579 100.0
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.7e-297 1025.4 580 94.3
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.5e-293 1012.3 583 92.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 3.4e-290 1001.1 589 91.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.1e-275 951.0 579 88.1
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.5e-274 947.6 584 86.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.2e-273 945.3 579 87.7
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.0e-266 922.2 594 83.0
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.6e-263 911.4 577 84.4
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.5e-261 906.0 581 83.8
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 3.1e-259 898.3 588 82.7
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.5e-258 894.4 582 81.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.6e-255 885.9 597 81.1
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.8e-255 885.2 584 80.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 3.6e-255 884.8 581 80.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.0e-253 879.0 590 80.0
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 7.5e-253 877.1 606 79.4
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.5e-253 877.1 580 80.2
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 9.8e-253 876.7 587 80.4
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-252 875.9 586 80.2
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.7e-252 875.9 536 85.4
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 2.2e-252 875.5 579 80.0
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.2e-252 875.5 581 80.4
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.2e-252 875.5 591 79.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.7e-252 874.8 584 79.8
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 6.3e-252 874.0 585 78.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 6.3e-252 874.0 588 80.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.1e-251 873.2 580 79.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-251 872.8 540 85.6
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.0e-251 870.5 580 79.5
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 7.0e-251 870.5 560 82.7
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 9.2e-251 870.2 577 80.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-250 869.8 577 80.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 7.8e-250 867.1 548 84.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 2.3e-249 865.5 576 80.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.9e-249 865.1 555 83.4
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.9e-249 864.8 527 85.4
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.1e-248 863.2 582 78.4
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.5e-248 862.1 593 79.6
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.3e-248 861.3 578 79.1
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 7.3e-248 860.5 540 84.3
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.6e-247 859.4 582 78.0
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.6e-247 859.4 527 84.6
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 2.1e-247 859.0 526 85.6
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.1e-247 859.0 586 77.8
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.8e-247 858.6 585 78.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 4.7e-247 857.8 527 84.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.7e-247 857.8 591 78.2
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 2.3e-246 855.5 579 77.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.3e-246 855.5 524 85.7
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.1e-246 855.1 579 77.7
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.1e-246 855.1 546 82.2
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 6.8e-246 854.0 580 79.8
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 8.9e-246 853.6 583 77.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-245 853.2 583 77.5
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.2e-245 853.2 578 78.5
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.5e-245 852.8 495 88.5
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.5e-245 852.8 629 75.7
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.4e-245 851.7 538 83.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 4.4e-245 851.3 550 83.8
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 4.4e-245 851.3 551 81.5
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 7.5e-245 850.5 527 83.3
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.5e-245 850.5 574 79.8
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.2e-244 849.0 594 77.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.2e-244 849.0 579 78.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.2e-244 849.0 563 79.4
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 8.3e-244 847.0 580 77.6
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.1e-243 846.7 596 76.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.1e-243 846.7 554 81.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-243 846.3 539 82.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-243 846.3 582 79.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.9e-243 845.9 530 84.3
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.9e-243 845.9 524 84.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.9e-243 845.9 536 83.2
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.0e-242 842.4 543 83.2
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.7e-242 842.0 526 82.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.7e-242 842.0 582 76.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.7e-242 842.0 580 77.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 7.8e-242 840.5 590 75.9
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-241 839.7 582 76.5
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.0e-241 838.6 506 85.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-240 835.9 582 76.8
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-239 833.2 581 76.4
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.2e-239 833.2 584 76.5
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.2e-239 833.2 581 77.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.8e-238 829.3 587 75.3
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.8e-237 824.3 526 82.3
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.7e-236 822.8 514 83.9
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.7e-236 821.6 510 85.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 3.7e-236 821.6 530 82.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.9e-236 821.2 618 73.9
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.9e-235 819.3 584 77.7
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 7.1e-235 817.4 542 79.0
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.9e-232 809.3 519 80.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.3e-232 808.5 529 81.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.6e-229 798.9 543 79.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-227 792.7 508 81.5
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 3.5e-226 788.5 535 77.4
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.8e-223 778.9 494 83.6
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-218 763.5 467 84.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 5.1e-217 758.1 436 90.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.1e-216 756.9 739 60.6
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.6e-216 754.6 530 74.3
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.1e-214 748.8 580 71.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 5.8e-213 744.6 500 78.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 6.4e-212 741.1 438 87.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 7.9e-210 734.2 459 81.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-208 730.3 438 85.6
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-207 726.1 530 72.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 4.0e-206 721.8 545 70.3
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.9e-204 715.7 555 68.6
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.4e-203 711.4 437 84.7
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 7.6e-197 691.0 440 84.1
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.9e-195 686.4 397 89.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 5.5e-195 684.9 544 67.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.3e-192 675.2 519 69.0
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.7e-186 656.0 425 81.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.0e-185 654.1 398 84.2
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 5.7e-184 648.3 407 81.8
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.1e-182 644.0 429 81.4
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.4e-182 643.7 439 75.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.8e-180 635.6 390 84.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 7.2e-179 631.3 428 76.6
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.8e-175 618.6 419 76.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.9e-173 611.7 426 73.7
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 4.1e-166 589.0 583 57.6
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 5.5e-163 578.6 469 68.2
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 8.0e-154 548.1 581 57.1
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 4.4e-152 542.3 384 75.8
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-151 539.7 317 87.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.5e-149 532.3 444 68.0
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.1e-142 509.6 403 71.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 7.0e-134 481.9 300 83.0
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.3e-132 476.9 355 69.0
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.3e-127 461.1 315 81.0
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.7e-127 460.7 262 90.5
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.4e-126 455.7 270 84.8
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 5.8e-120 435.6 286 79.7
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 7.5e-120 435.3 536 47.4
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.8e-90 337.0 231 80.1
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.6e-90 336.7 484 46.5
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 7.6e-80 302.4 187 84.5
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 7.6e-80 302.4 585 41.0
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.7e-79 301.2 213 71.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 4.2e-70 270.0 310 53.2
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 6.9e-57 226.1 143 80.4
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.5e-55 219.2 169 66.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 5.5e-54 216.5 193 59.6
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 3.3e-51 207.2 126 86.5
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-46 192.2 119 83.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.7e-35 153.3 102 77.5
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.8e-33 148.3 94 74.5
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 4.1e-33 147.1 109 76.1
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.4e-33 146.7 155 56.8
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 6.1e-29 133.3 79 86.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.4e-28 132.1 101 72.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 7.5e-27 126.3 78 87.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-25 122.1 171 46.8
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.1e-25 120.6 69 87.0
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 1.9e-22 111.7 90 70.0
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 4.3e-22 110.5 90 58.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 2.8e-21 107.8 70 81.4
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.3e-15 88.2 53 84.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 4.0e-12 77.4 58 70.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.0e-11 75.1 142 37.3
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 5.8e-11 73.6 50 70.0
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 9.8e-11 72.8 67 53.7
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.9e-09 68.6 52 63.5
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.6e-08 65.5 93 46.2
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 6.6e-07 60.1 39 82.1


User provided reference genes

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