Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 9.4e-139 496.9 257 100.0
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 2.2e-135 485.7 257 97.3
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 9.1e-134 480.3 258 96.9
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 4.2e-131 471.5 257 91.1
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 3.6e-130 468.4 258 90.3
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 7.9e-130 467.2 258 90.3
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.4e-129 466.5 259 93.1
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.8e-129 466.1 257 91.1
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 3.0e-129 465.3 258 93.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 7.2e-123 444.1 257 85.2
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 7.2e-123 444.1 257 85.2
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.4e-123 443.7 257 85.2
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 2.1e-122 442.6 258 87.6
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.7e-122 441.4 257 84.4
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 6.1e-122 441.0 258 87.2
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 6.1e-122 441.0 257 85.2
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.4e-121 439.9 256 84.4
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.3e-121 439.1 258 85.3
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 3.0e-121 438.7 257 84.0
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 8.8e-121 437.2 256 84.0
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.2e-120 436.8 258 85.3
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.0e-120 436.0 254 83.5
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 3.3e-120 435.3 257 83.7
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 4.4e-120 434.9 257 83.3
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 4.4e-120 434.9 257 82.9
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 5.7e-120 434.5 257 82.9
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.3e-119 433.3 257 82.5
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 1.7e-119 433.0 257 82.5
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.2e-119 432.6 257 83.3
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 2.2e-119 432.6 256 82.8
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.2e-119 432.6 257 82.5
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.8e-119 432.2 254 83.1
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.8e-119 432.2 254 83.1
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 6.3e-119 431.0 258 83.3
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 6.3e-119 431.0 258 83.3
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 6.3e-119 431.0 257 83.3
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 6.3e-119 431.0 257 83.3
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 8.2e-119 430.6 257 83.7
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.1e-118 430.3 261 82.8
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 1.8e-118 429.5 257 82.1
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.8e-118 429.5 257 82.1
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.4e-118 429.1 257 82.1
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.1e-118 428.3 257 80.5
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 5.3e-118 427.9 257 81.7
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 5.3e-118 427.9 257 81.7
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 5.3e-118 427.9 258 83.3
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 9.1e-118 427.2 257 82.5
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.2e-117 426.8 257 81.7
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.2e-117 426.8 257 81.3
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.6e-117 426.4 257 81.3
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 2.0e-117 426.0 257 81.3
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.0e-117 426.0 254 82.3
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 2.7e-117 425.6 257 81.3
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 2.7e-117 425.6 257 81.3
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 4.5e-117 424.9 257 81.3
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 5.9e-117 424.5 257 80.2
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 5.9e-117 424.5 258 81.4
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 5.9e-117 424.5 257 80.2
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 7.7e-117 424.1 253 82.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 7.7e-117 424.1 278 77.3
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.3e-116 423.3 266 80.1
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.7e-116 422.9 256 81.2
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 2.2e-116 422.5 257 80.9
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.9e-116 422.2 253 81.4
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 5.0e-116 421.4 258 82.2
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.5e-116 421.0 257 79.0
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 1.5e-115 419.9 257 80.9
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.5e-115 419.9 253 79.8
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.5e-115 419.9 253 81.4
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 1.9e-115 419.5 257 82.5
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 2.5e-115 419.1 253 80.2
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 3.2e-115 418.7 257 82.1
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 3.2e-115 418.7 285 74.7
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 4.2e-115 418.3 257 80.2
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.6e-114 416.4 253 80.2
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 1.6e-114 416.4 238 83.2
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.0e-113 413.7 284 74.3
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 3.4e-112 408.7 225 86.7
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 4.8e-111 404.8 254 76.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-110 403.7 226 85.4
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 7.0e-110 401.0 254 76.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.2e-109 400.2 246 80.9
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.3e-108 396.7 297 68.0
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 2.2e-108 396.0 211 91.9
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.9e-108 395.6 255 75.7
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 5.5e-107 391.3 252 75.4
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 1.0e-105 387.1 235 81.3
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 1.0e-105 387.1 235 81.3
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 2.2e-103 379.4 222 81.1
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 7.0e-102 374.4 254 74.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 9.2e-102 374.0 258 74.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 3.8e-100 368.6 257 73.9
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.0e-100 368.2 257 73.9
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 3.6e-98 362.1 253 69.6
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 4.7e-98 361.7 253 71.1
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.0e-97 360.5 257 73.2
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.5e-96 356.7 261 73.2
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 2.2e-95 352.8 212 82.1
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 2.2e-95 352.8 253 68.0
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 2.2e-95 352.8 286 67.5
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.1e-94 350.5 252 73.4
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 1.1e-94 350.5 456 46.7
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.4e-94 349.4 253 68.0
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 6.6e-92 341.3 194 85.1
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 7.3e-91 337.8 254 66.9
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.6e-90 336.7 213 76.1
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.8e-89 333.2 199 80.4
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 4.4e-88 328.6 240 67.1
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 2.2e-87 326.2 254 68.1
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 4.1e-86 322.0 255 64.7
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 8.6e-84 314.3 257 65.0
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 8.1e-82 307.8 272 63.2
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.3e-81 306.2 245 65.7
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 1.7e-79 300.1 206 74.3
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.9e-78 296.6 253 59.3
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 3.0e-76 289.3 257 61.9
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.3e-75 284.6 269 59.5
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.8e-73 280.0 161 83.2
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 2.3e-73 279.6 344 50.6
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.0e-72 276.6 213 69.0
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 3.2e-70 269.2 161 82.6
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 5.4e-70 268.5 225 55.6
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 1.2e-69 267.3 286 53.8
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 8.6e-68 261.2 211 65.4
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 8.9e-65 251.1 175 73.7
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.8e-64 248.4 225 52.4
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 2.2e-63 246.5 232 54.3
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.9e-62 243.4 146 83.6
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.1e-58 229.9 206 59.2
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 4.8e-58 228.8 180 66.7
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.3e-52 209.9 150 68.0
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.0e-44 183.0 112 75.9
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.6e-42 177.2 133 71.4
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 2.1e-42 176.8 119 71.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.5e-35 154.1 91 80.2
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 8.2e-34 148.3 174 48.9
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.5e-32 144.1 257 41.2
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 2.0e-32 143.7 97 72.2
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-29 133.7 102 67.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.8e-12 77.4 56 66.1


User provided reference genes

Program Settings