Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.1e-240 836.3 418 100.0
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.8e-219 765.8 418 88.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.2e-215 753.1 417 87.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.6e-215 750.4 416 87.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 3.0e-211 738.4 417 83.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 3.9e-211 738.0 418 84.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 5.1e-211 737.6 417 84.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.7e-211 736.9 417 83.5
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.5e-210 736.1 418 84.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.9e-210 735.7 418 84.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.3e-210 734.6 418 84.2
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.7e-210 733.4 418 84.4
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.3e-209 730.7 417 83.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 6.9e-208 727.2 418 83.3
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.5e-206 720.3 416 82.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.8e-203 712.6 418 80.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.5e-202 709.5 423 82.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-199 698.7 449 75.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.1e-196 687.6 415 77.8
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 5.2e-195 684.5 415 77.6
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 8.8e-195 683.7 416 76.7
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.1e-194 683.3 416 77.4
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-194 683.3 417 77.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 76.9
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 77.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 9.7e-194 680.2 416 77.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.7e-193 679.5 415 77.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.2e-193 679.1 414 76.1
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.7e-193 678.3 418 75.6
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.8e-193 677.9 415 76.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-192 676.4 436 74.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 75.7
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 76.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 75.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.3e-192 674.5 416 76.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.3e-192 674.5 416 76.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.2e-191 673.3 418 75.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.6e-191 672.2 416 76.4
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.6e-191 672.2 416 76.2
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 5.9e-191 671.0 416 74.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 7.7e-191 670.6 416 74.8
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 75.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.7e-190 669.5 415 75.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 75.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.2e-190 669.1 437 73.0
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.2e-190 669.1 415 76.1
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 5.0e-190 667.9 416 74.8
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.5e-190 667.5 416 74.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.5e-190 667.2 416 74.8
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 75.2
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 75.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 3.2e-189 665.2 418 74.6
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 4.2e-189 664.8 415 74.9
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 5.5e-189 664.5 416 75.2
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.5e-189 664.5 415 74.7
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.2e-189 664.1 416 74.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 7.2e-189 664.1 416 75.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-188 662.9 414 73.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.0e-187 660.2 416 74.3
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.8e-187 659.4 416 74.5
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.8e-187 659.4 422 73.9
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 3.0e-187 658.7 414 73.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.2e-186 656.8 415 75.2
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-186 656.8 432 73.4
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.0e-186 656.0 416 74.3
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 3.3e-186 655.2 416 74.5
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.7e-186 654.4 416 73.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 9.7e-186 653.7 414 75.1
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 8.2e-185 650.6 416 73.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-184 650.2 432 72.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.4e-184 649.8 416 73.6
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.4e-184 649.8 416 74.3
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.8e-184 649.4 416 73.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.8e-184 649.4 416 72.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.1e-184 648.7 414 74.4
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 5.3e-184 647.9 415 73.5
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.3e-184 647.9 433 71.4
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.0e-184 647.5 416 73.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 7.0e-184 647.5 416 74.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-183 646.7 411 73.7
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.2e-183 646.7 416 72.8
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.6e-183 646.4 416 74.0
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.0e-183 646.0 416 72.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.0e-183 646.0 409 73.1
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.0e-183 646.0 414 74.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.0e-183 646.0 423 72.3
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.7e-183 645.6 416 73.1
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.7e-183 645.6 415 74.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.5e-183 645.2 416 72.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.7e-182 642.9 416 73.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.8e-182 641.7 432 71.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 6.5e-182 641.0 415 73.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.5e-182 641.0 417 72.7
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-181 640.2 432 71.1
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.1e-181 640.2 417 71.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.5e-181 639.0 417 72.7
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.2e-181 638.3 416 72.6
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.2e-181 638.3 430 71.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 9.4e-181 637.1 414 71.7
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 9.4e-181 637.1 416 72.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.6e-180 636.3 403 76.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.1e-180 636.0 416 71.6
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.7e-180 634.8 418 72.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 8.0e-180 634.0 416 72.8
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.0e-179 633.6 411 72.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-179 633.3 411 72.5
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.4e-178 628.2 418 71.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.5e-178 627.5 413 71.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.1e-176 621.7 359 80.5
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 5.4e-176 621.3 417 70.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 7.0e-176 620.9 416 71.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 9.1e-176 620.5 412 72.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 9.1e-176 620.5 412 71.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 2.0e-175 619.4 416 71.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.9e-175 617.8 416 71.2
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 6.5e-174 614.4 414 68.4
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.9e-173 612.8 456 64.7
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.2e-173 610.9 411 71.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-172 610.1 408 70.8
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.6e-172 608.6 412 68.7
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.3e-171 605.9 343 83.1
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.5e-170 603.2 413 68.8
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 6.3e-169 597.8 500 60.2
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.3e-169 597.8 414 68.1
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.8e-168 596.3 368 76.1
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 7.0e-168 594.3 417 67.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 5.9e-167 591.3 415 68.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 5.9e-167 591.3 416 68.8
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 6.6e-166 587.8 358 76.8
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 8.6e-166 587.4 416 69.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.6e-165 584.7 414 67.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-163 580.5 411 68.4
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.6e-162 575.9 363 74.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.9e-161 571.6 341 78.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 9.5e-157 557.4 416 66.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.2e-153 546.2 412 62.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.2e-151 540.4 412 61.4
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-143 512.7 416 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.5e-143 512.3 410 60.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 9.5e-141 504.2 411 57.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.0e-139 498.8 433 58.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-132 476.1 316 73.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-128 463.8 340 66.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.5e-127 459.1 301 72.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 8.7e-126 454.5 426 53.1
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 9.3e-120 434.5 302 70.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-109 401.0 223 82.1
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-109 400.6 235 80.4
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 7.4e-101 371.7 284 63.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.8e-100 369.0 421 45.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.4e-99 366.7 498 40.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.9e-94 349.4 408 44.9
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.5e-93 347.4 244 68.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 5.7e-93 345.5 406 44.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.3e-92 344.4 198 79.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.3e-91 339.0 198 78.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.1e-75 288.1 221 63.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-75 285.8 226 65.0
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.3e-70 270.4 157 81.5
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.3e-65 254.6 174 69.0
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.5e-65 251.9 258 52.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-60 236.9 167 68.3
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.4e-59 232.6 177 65.5
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.2e-54 216.1 160 66.2
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.4e-51 208.0 126 75.4
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 3.1e-51 206.8 229 50.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.9e-50 202.6 124 75.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.3e-49 200.7 121 73.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.8e-47 193.7 335 36.4
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.6e-47 193.4 181 53.0
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.9e-46 188.7 126 71.4
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-43 181.8 341 35.8
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.8e-37 158.7 122 60.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-33 147.9 88 84.1
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.4e-27 126.3 124 54.0
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 7.1e-27 125.9 100 61.0
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.1e-24 118.6 78 73.1
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.6e-23 114.8 71 76.1
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.1e-19 100.1 87 52.9
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.2e-18 98.6 98 48.0
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 4.6e-10 70.1 62 53.2
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.6e-07 61.6 295 21.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.8e-07 60.8 58 48.3
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-06 58.2 59 54.2
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 3.1e-06 57.4 35 68.6


User provided reference genes

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