Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 2.4e-167 592.0 289 100.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.1e-156 556.6 289 93.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.7e-155 551.2 289 91.3
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.7e-155 551.2 289 92.7
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 8.9e-146 520.4 289 85.8
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.4e-145 518.5 287 86.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.1e-143 513.5 291 84.9
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 7.8e-142 507.3 289 83.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.7e-141 506.1 289 81.7
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.5e-140 502.3 290 83.4
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.3e-140 501.9 284 83.1
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 7.3e-140 500.7 287 82.2
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 2.1e-126 456.1 254 83.1
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.5e-124 449.9 289 74.0
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 7.3e-124 447.6 288 74.7
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 9.6e-124 447.2 288 74.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.2e-123 446.8 286 73.8
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.6e-123 446.4 286 74.8
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-122 443.7 288 73.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.4e-122 443.4 289 73.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.4e-122 443.4 289 73.4
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.9e-122 441.0 289 73.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 6.9e-122 441.0 289 73.0
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 9.0e-122 440.7 287 73.2
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.2e-121 440.3 285 73.3
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-120 436.0 283 72.8
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 2.2e-120 436.0 286 72.7
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.2e-120 436.0 286 72.7
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.8e-120 435.3 286 72.0
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.9e-120 434.9 289 73.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.4e-120 434.5 286 72.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.4e-119 433.3 285 72.3
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 3.2e-119 432.2 287 72.5
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 4.2e-119 431.8 289 72.7
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.2e-119 431.8 290 71.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 5.4e-119 431.4 288 70.1
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.2e-118 430.3 287 71.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.2e-118 430.3 287 70.7
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 72.7
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.5e-118 428.7 288 72.9
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 7.8e-118 427.6 289 70.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.0e-117 427.2 287 72.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.0e-117 427.2 287 72.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.7e-117 426.4 287 71.8
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.7e-117 426.4 287 71.8
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.7e-117 426.4 287 70.4
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.1e-117 424.9 289 72.7
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 6.6e-117 424.5 287 72.8
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 8.7e-117 424.1 287 71.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.7e-117 424.1 287 70.4
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.5e-116 423.3 287 70.7
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.9e-116 422.9 287 70.7
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.9e-116 422.9 287 71.4
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 5.6e-116 421.4 289 70.9
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 5.6e-116 421.4 287 70.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.6e-116 421.4 287 71.1
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 9.6e-116 420.6 286 71.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 9.6e-116 420.6 287 70.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 69.2
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.8e-115 418.3 287 70.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 8.1e-115 417.5 287 70.0
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 8.1e-115 417.5 287 71.1
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.4e-114 416.8 288 71.2
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.8e-114 416.4 287 70.0
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.4e-114 416.0 288 70.5
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.1e-114 415.6 288 67.7
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 6.9e-114 414.5 286 69.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 9.0e-114 414.1 298 66.4
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 9.0e-114 414.1 284 68.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.5e-113 413.3 289 69.9
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.0e-113 412.9 286 68.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.6e-113 412.5 303 67.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 2.6e-113 412.5 288 67.4
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.4e-113 412.1 288 68.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.4e-113 412.1 286 70.3
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 9.9e-113 410.6 288 67.7
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.3e-112 410.2 286 67.5
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.7e-112 409.8 255 77.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.7e-112 409.8 288 69.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.9e-112 409.1 286 67.5
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 8.4e-112 407.5 324 64.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.4e-111 404.8 294 65.0
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.6e-110 403.3 239 78.7
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.0e-110 401.4 286 67.1
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.8e-109 399.8 288 66.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 3.9e-109 398.7 324 60.2
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.1e-109 398.3 288 66.0
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 6.7e-109 397.9 255 75.3
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.5e-108 396.0 326 61.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.5e-108 396.0 326 61.3
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.6e-107 393.3 288 66.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 4.8e-107 391.7 295 64.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 8.1e-107 391.0 287 65.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 5.3e-106 388.3 286 64.7
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.5e-105 386.7 287 65.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 4.9e-104 381.7 290 63.4
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.2e-103 378.6 284 64.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 4.2e-103 378.6 256 71.5
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 9.3e-103 377.5 286 66.1
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.1e-102 376.3 287 65.2
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 3.5e-102 375.6 290 66.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-101 373.2 288 64.2
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.3e-101 372.9 254 69.3
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 6.9e-98 361.3 278 61.9
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.5e-97 358.6 227 74.9
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.3e-96 357.1 287 60.6
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.4e-95 353.6 255 65.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.6e-94 350.1 282 61.0
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.1e-90 335.5 281 61.2
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.4e-89 332.4 285 58.6
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.4e-89 332.4 208 75.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.0e-88 330.9 284 58.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.0e-88 330.9 287 58.2
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 5.0e-88 328.6 242 66.5
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.3e-83 313.9 288 54.5
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.1e-82 309.3 287 52.6
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 5.3e-82 308.5 281 53.4
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.4e-79 300.4 278 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.6e-76 289.7 246 57.3
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.9e-72 276.2 230 63.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 7.0e-66 255.0 168 68.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.1e-62 243.4 193 64.2
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.8e-58 230.3 298 46.6
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.4e-50 204.1 262 43.9
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 6.8e-45 185.3 149 63.1
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.6e-44 183.3 273 38.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 7.5e-44 181.8 131 64.9
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 4.9e-43 179.1 152 60.5
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.4e-42 176.8 149 61.1
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 9.2e-42 174.9 152 59.9
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-38 164.5 137 61.3
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 6.0e-33 145.6 109 61.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.5e-31 138.3 259 32.4
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 6.8e-29 132.1 168 43.5
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 8.9e-29 131.7 93 68.8
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 4.4e-28 129.4 369 28.5
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.3e-24 117.1 75 69.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 5.6e-23 112.5 83 65.1
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.6e-20 103.6 101 51.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.4e-20 103.2 86 61.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.4e-20 102.8 129 50.4
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 6.4e-19 99.0 63 68.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.9e-16 89.7 70 61.4
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.1e-15 88.2 67 62.7
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.4e-13 81.3 189 30.2
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.4e-13 80.5 93 47.3
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 5.2e-13 79.3 75 60.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.7e-11 74.3 139 35.3
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.2e-11 73.9 61 60.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-11 72.8 89 47.2
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-11 72.8 89 47.2
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 6.4e-11 72.4 93 45.2
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-10 71.6 46 63.0
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-10 70.9 46 63.0
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-10 70.9 46 63.0
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.2e-10 70.1 214 30.8
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.3e-10 68.6 46 58.7
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-08 65.1 57 57.9
VMungo1309G0877 Vigna mungo HOM05D000050 ORTHO05D000380 1.3e-08 64.7 48 68.8


User provided reference genes

Program Settings