Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 6.7e-182 640.6 329 100.0
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 7.3e-136 487.6 313 83.1
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 9.8e-133 477.2 311 82.0
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 7.1e-123 444.5 305 76.1
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.9e-120 436.4 331 73.1
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.9e-120 436.4 314 76.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 1.4e-115 420.2 308 72.7
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.1e-114 416.4 312 70.5
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.6e-111 406.8 286 74.8
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.4e-110 403.7 311 67.5
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.0e-109 399.8 304 68.1
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 2.6e-109 399.4 290 71.0
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 7.6e-109 397.9 299 70.2
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.9e-107 393.3 307 68.4
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 9.3e-107 391.0 282 69.9
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.6e-106 390.2 230 83.5
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 2.1e-106 389.8 230 83.0
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.1e-106 389.8 280 70.7
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 2.1e-106 389.8 310 68.1
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 2.1e-106 389.8 293 68.3
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 1.3e-105 387.1 282 69.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 6.6e-105 384.8 295 67.1
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 8.7e-105 384.4 300 67.3
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 3.3e-104 382.5 285 67.7
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 4.3e-104 382.1 310 64.8
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.3e-104 382.1 312 65.7
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 4.3e-104 382.1 319 64.9
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 7.3e-104 381.3 278 69.8
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 7.3e-104 381.3 316 63.6
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 9.6e-104 380.9 282 67.4
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 9.6e-104 380.9 309 66.3
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.1e-103 379.8 293 68.3
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 3.6e-103 379.0 298 66.4
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 8.1e-103 377.9 235 79.6
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 1.1e-102 377.5 303 66.0
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.4e-102 377.1 282 67.0
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 9.0e-102 374.4 276 68.8
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.2e-101 374.0 292 64.7
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.5e-101 373.6 281 66.5
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 2.0e-101 373.2 278 68.0
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 2.6e-101 372.9 280 67.5
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 5.8e-101 371.7 278 66.9
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 5.8e-101 371.7 284 65.5
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 5.8e-101 371.7 287 66.9
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 7.6e-101 371.3 306 65.0
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 9.9e-101 370.9 292 64.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.3e-100 370.5 272 67.3
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 1.7e-100 370.2 284 65.5
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.7e-100 370.2 288 66.7
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 4.9e-100 368.6 287 65.9
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 6.4e-100 368.2 278 66.2
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 6.4e-100 368.2 278 66.2
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.1e-99 367.5 337 59.3
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.4e-99 367.1 288 66.7
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 1.4e-99 367.1 279 65.9
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.9e-99 366.7 229 77.3
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 3.2e-99 365.9 279 67.0
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 3.2e-99 365.9 306 63.4
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 4.2e-99 365.5 279 67.0
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 1.2e-98 364.0 299 63.2
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.1e-98 363.2 280 66.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 2.3e-97 359.8 263 74.5
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 6.7e-97 358.2 304 63.5
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.1e-96 357.5 234 74.4
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 1.1e-96 357.5 296 62.8
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 2.5e-96 356.3 272 64.7
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.5e-96 356.3 230 73.5
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 2.5e-96 356.3 311 59.5
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 4.3e-96 355.5 251 70.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.6e-96 355.1 276 66.7
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.3e-95 354.0 228 73.7
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 2.8e-95 352.8 280 65.4
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 4.8e-95 352.1 305 61.6
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 5.8e-93 345.1 318 59.1
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.7e-92 343.6 307 59.0
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 3.8e-92 342.4 277 62.1
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 4.9e-92 342.0 224 79.5
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 6.4e-92 341.7 290 61.4
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.4e-91 340.5 301 59.1
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 1.3e-89 334.0 254 65.4
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 6.7e-89 331.6 216 75.0
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 7.4e-88 328.2 294 59.2
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 4.8e-87 325.5 303 59.4
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.2e-85 320.9 281 57.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.4e-85 319.3 203 77.3
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.7e-84 317.0 206 74.8
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.7e-84 317.0 217 72.8
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 3.2e-83 312.8 292 54.1
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.8e-79 299.7 205 72.7
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 2.6e-77 293.1 205 72.2
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 5.9e-77 292.0 262 61.5
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 1.5e-72 277.3 268 53.4
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 5.9e-69 265.4 221 66.5
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 7.7e-69 265.0 183 69.4
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 1.4e-67 260.8 273 48.7
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.2e-66 257.7 169 76.3
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 1.7e-63 247.3 305 44.9
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.2e-63 246.9 213 62.0
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.5e-61 240.7 289 48.4
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 4.5e-61 239.2 270 47.4
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 4.5e-53 212.6 268 42.2
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.5e-48 197.6 312 40.7
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 7.0e-46 188.7 121 76.0
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.2e-45 188.0 173 61.3
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 5.0e-36 156.0 116 67.2
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 3.0e-33 146.7 180 43.3
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.8e-30 137.5 100 68.0
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 2.0e-29 134.0 100 65.0
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 2.2e-23 114.0 298 31.2
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 8.3e-23 112.1 340 28.2
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 4.0e-17 93.2 103 53.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 8.9e-17 92.0 102 52.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 1.1e-11 75.1 48 72.9
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 2.8e-10 70.5 97 46.4
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 6.8e-09 65.9 52 57.7
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 1.2e-08 65.1 52 55.8
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 1.2e-08 65.1 52 55.8
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 1.2e-08 65.1 52 55.8
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.9e-07 60.5 34 79.4


User provided reference genes

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