Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.6e-217 758.4 381 100.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.6e-217 758.4 381 100.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 4.7e-195 684.5 384 91.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.0e-194 681.4 385 89.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.1e-175 620.2 385 80.8
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.1e-172 610.1 383 80.4
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.3e-172 608.2 383 80.7
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 4.9e-168 594.7 383 79.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.7e-166 589.0 381 78.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 4.7e-163 578.2 383 77.8
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.7e-157 557.4 391 74.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.5e-156 556.6 391 74.7
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.2e-151 538.9 384 77.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.7e-144 516.5 359 72.7
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.9e-144 515.8 359 72.4
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 6.4e-144 514.6 382 69.1
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.1e-143 513.8 381 69.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.4e-143 513.5 381 69.8
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.9e-143 513.1 382 68.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 4.2e-143 511.9 358 72.6
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 5.4e-143 511.5 362 71.5
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.4e-143 511.5 358 73.2
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.9e-142 507.7 376 69.9
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.0e-141 507.3 383 68.1
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.0e-141 507.3 376 70.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.8e-141 506.5 365 71.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.8e-141 506.5 366 72.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.9e-141 505.4 373 70.0
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 8.7e-141 504.2 370 68.9
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.5e-140 503.4 373 69.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.3e-140 501.9 377 69.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.6e-139 500.0 371 68.5
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.1e-139 499.6 369 70.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 6.2e-139 498.0 359 70.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 8.1e-139 497.7 388 66.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.1e-138 497.3 378 66.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 3.1e-138 495.7 349 71.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.3e-138 495.0 385 65.7
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 5.3e-138 495.0 403 66.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.9e-138 494.6 388 66.2
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 5.8e-137 491.5 367 68.1
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.8e-137 491.5 370 69.2
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.9e-137 490.7 359 70.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.8e-136 488.8 377 66.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.4e-135 486.9 359 70.5
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.2e-135 485.3 374 66.6
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 7.1e-135 484.6 370 66.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 7.1e-135 484.6 369 68.6
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.7e-134 482.6 370 66.2
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.8e-133 479.9 347 70.6
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.8e-133 479.9 382 63.6
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.8e-133 479.9 359 68.5
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 3.0e-133 479.2 403 62.3
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 6.7e-133 478.0 364 65.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.5e-132 476.1 369 65.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.5e-132 476.1 359 68.0
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 5.6e-132 474.9 380 64.2
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.3e-131 473.8 382 65.7
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.7e-131 472.2 363 68.0
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.8e-131 471.9 387 63.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 6.2e-131 471.5 384 64.3
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.2e-131 471.1 397 63.5
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.8e-130 469.9 358 67.3
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.4e-130 469.5 358 67.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 9.0e-130 467.6 368 65.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.7e-128 463.4 378 62.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.9e-128 462.6 287 78.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 3.8e-128 462.2 364 65.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 6.5e-128 461.5 363 65.6
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.1e-127 460.7 376 63.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.2e-126 457.2 380 61.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.2e-126 457.2 348 67.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.0e-125 454.1 364 62.4
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.5e-124 450.3 387 59.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.5e-124 450.3 387 59.7
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.5e-124 450.3 359 64.6
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 7.4e-124 448.0 387 61.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 9.7e-124 447.6 368 62.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-123 447.2 387 59.7
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-123 447.2 287 76.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.3e-123 447.2 388 59.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.2e-123 446.4 287 75.3
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.2e-123 446.4 382 60.5
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.1e-122 444.1 386 60.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.1e-122 442.2 368 62.2
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.9e-122 441.4 371 61.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 6.9e-122 441.4 380 60.5
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-121 440.7 383 60.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.2e-121 440.7 377 62.1
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.0e-121 439.9 362 63.0
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.0e-121 439.9 373 61.9
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.7e-121 438.0 404 57.9
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-120 437.6 362 63.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-120 437.6 362 63.3
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.0e-120 437.6 290 73.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 8.5e-120 434.5 309 69.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-119 434.1 387 58.9
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.9e-119 433.3 362 63.0
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 5.5e-119 431.8 368 61.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.6e-118 430.3 358 63.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.6e-118 428.7 384 59.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 5.1e-117 425.2 383 60.6
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.3e-115 418.3 361 61.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.4e-114 416.4 333 63.7
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 4.1e-114 415.6 369 60.2
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 4.1e-114 415.6 365 59.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.3e-114 415.2 377 60.5
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 5.3e-114 415.2 286 71.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.2e-113 414.1 364 59.1
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 5.9e-113 411.8 363 62.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.2e-112 409.8 369 58.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 2.2e-112 409.8 366 60.1
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.8e-112 409.1 379 59.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.5e-112 408.3 345 62.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.7e-110 402.1 360 59.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 7.9e-110 401.4 358 60.6
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.7e-109 398.3 485 47.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.5e-108 397.1 322 63.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-108 396.7 357 59.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-108 396.7 357 59.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-107 393.3 358 59.5
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.2e-107 393.3 358 59.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.8e-107 392.9 355 60.3
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 3.7e-107 392.5 357 59.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.7e-107 392.5 355 60.3
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 8.2e-107 391.3 355 60.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-106 391.0 355 59.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.4e-106 390.6 357 54.9
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-106 389.8 355 60.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.4e-106 389.8 352 58.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 7.0e-106 388.3 345 60.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.5e-105 386.0 366 55.5
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.7e-99 367.1 289 59.9
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.8e-99 366.3 285 66.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 8.5e-96 354.8 286 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.1e-90 336.3 344 52.0
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 3.8e-88 329.3 378 48.4
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.2e-86 324.3 251 66.1
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.6e-70 270.8 180 75.0
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.8e-70 270.0 256 60.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.7e-59 234.2 291 44.3
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.0e-57 225.7 280 42.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 5.2e-53 212.6 154 67.5
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-52 211.5 171 63.7
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.6e-38 164.5 250 40.8
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 3.8e-27 126.7 202 40.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.9e-24 116.7 72 73.6
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.5e-23 114.0 98 61.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.6e-23 112.8 174 41.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.2e-20 105.1 111 55.9
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 6.0e-17 92.8 277 27.8
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.7e-14 83.6 53 71.7
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.4e-12 77.0 119 41.2


User provided reference genes

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