Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 3055.8 1527 100.0
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 2527.3 1468 86.0
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 2504.6 1464 85.8
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 2473.0 1469 85.2
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 2298.5 1467 79.1
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2252.6 1465 78.2
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2243.8 1468 77.7
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 2189.5 1467 76.4
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 2182.5 1467 76.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2132.8 1474 75.1
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2059.6 1470 71.9
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2044.2 1488 71.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2041.9 1485 71.2
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1707.2 1510 59.8
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1697.2 1509 59.0
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1679.8 1508 59.0
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1669.1 1520 58.3
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1658.7 1508 58.5
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1657.5 1542 57.6
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1639.4 1474 59.7
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1623.6 1545 56.6
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1612.0 1508 57.9
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1607.8 1509 57.5
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1602.8 1526 56.5
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1602.8 1469 58.2
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1599.3 1495 57.3
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1595.1 1508 57.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1588.9 1511 56.8
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1588.9 1513 56.9
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1574.3 1519 57.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1572.0 1516 57.4
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1566.6 1485 57.9
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1558.9 1598 53.8
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1548.9 1532 56.3
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1546.9 1540 55.9
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1540.8 1538 55.1
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1540.0 1532 56.1
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1526.9 1510 55.0
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1505.3 1591 52.7
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1503.4 1512 54.0
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1458.4 1513 52.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1458.4 1521 53.1
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1448.3 1497 52.9
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1440.2 1487 54.2
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1439.5 1512 51.7
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1437.9 1498 52.9
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1434.5 1417 55.3
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1431.8 1517 51.5
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1532 51.6
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1409.8 1501 52.3
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1401.3 1543 50.1
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1399.4 1520 50.6
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1397.1 1526 50.5
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1396.7 1355 57.0
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1395.9 1500 52.0
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1387.9 1496 51.6
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1387.1 1507 51.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1384.8 1515 51.0
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1382.9 1526 50.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1382.5 1498 51.7
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1382.5 1525 50.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1381.7 1533 49.9
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1381.3 1552 50.6
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1380.5 1501 51.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1376.7 1499 51.6
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1376.7 1499 51.6
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1373.6 1513 50.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1372.8 1518 51.0
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1370.1 1549 49.8
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1366.7 1508 50.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1362.4 1503 50.1
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1360.9 1561 49.7
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1359.7 1556 49.7
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1358.2 1481 51.0
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1354.7 1516 50.5
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1352.8 1516 50.7
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1347.8 1499 50.7
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1341.6 1513 48.8
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1335.1 1502 49.5
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1334.7 1501 50.0
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1318.9 1517 49.0
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1316.6 1514 49.3
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1311.2 1405 51.2
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1307.0 1517 49.0
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1288.9 1347 52.3
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1288.5 1293 54.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1271.1 1353 52.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1256.9 1499 47.7
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1229.2 1563 46.2
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1184.5 1510 44.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1154.0 1530 45.4
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1147.9 1447 46.9
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1143.6 1107 55.0
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.4e-306 1057.0 1514 42.2
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 3.6e-302 1042.3 1087 52.3
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.3e-259 901.0 997 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 5.8e-244 849.0 1627 35.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 7.9e-193 679.1 903 44.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.0e-168 597.4 474 67.7
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.7e-166 591.7 474 65.8
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.0e-159 568.2 1478 30.4
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 8.0e-153 546.2 1046 36.6
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.9e-138 498.4 685 42.3
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 5.4e-109 400.6 400 55.2
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.3e-56 224.6 606 30.5
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 8.5e-46 190.7 175 60.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 6.3e-41 174.5 179 50.3
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 4.0e-35 155.2 97 71.1
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 5.4e-32 144.8 93 66.7
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.6e-23 116.7 81 71.6
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.5e-21 109.4 88 61.4
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.5e-21 109.4 88 61.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.5e-18 97.8 67 79.1
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.4e-16 92.8 89 48.3
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.1e-11 75.9 80 48.8
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.5e-10 73.6 102 43.1
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 3.9e-06 58.9 147 34.0


User provided reference genes

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