Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 8.5e-196 686.8 341 100.0
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 2.0e-165 585.9 336 86.6
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 6.3e-159 564.3 335 82.7
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 7.7e-157 557.4 333 83.8
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.5e-155 552.4 332 81.3
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 3.0e-153 545.4 331 82.5
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.1e-147 526.9 332 79.2
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 7.5e-144 514.2 332 75.6
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 9.2e-142 507.3 332 77.1
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 1.2e-130 470.3 332 71.4
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 1.3e-127 460.3 335 70.1
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 1.4e-126 456.8 332 68.7
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 3.2e-126 455.7 332 68.4
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 1.0e-116 424.1 332 60.8
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 3.1e-113 412.5 332 60.8
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 6.9e-113 411.4 333 61.6
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 5.4e-110 401.7 332 59.9
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 3.5e-109 399.1 336 60.7
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 3.5e-109 399.1 334 59.0
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 1.7e-108 396.7 347 56.5
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 3.9e-108 395.6 331 58.9
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 9.6e-107 391.0 331 58.3
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 4.8e-106 388.7 330 59.1
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 4.0e-105 385.6 335 57.0
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 9.0e-105 384.4 337 57.0
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 1.7e-103 380.2 333 56.2
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 2.9e-103 379.4 332 55.7
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.8e-103 379.0 336 56.5
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 3.8e-103 379.0 341 54.8
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 1.9e-102 376.7 339 58.1
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 2.4e-102 376.3 337 57.3
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 2.4e-102 376.3 336 57.7
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.2e-102 375.9 335 56.7
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.2e-102 375.9 338 56.5
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 3.2e-102 375.9 339 58.1
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 5.5e-102 375.2 329 57.1
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 7.1e-102 374.8 336 56.2
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 9.3e-102 374.4 339 54.9
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 1.2e-101 374.0 333 56.8
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.6e-101 373.6 349 56.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 6.0e-101 371.7 335 56.1
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 7.9e-101 371.3 338 55.9
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 1.9e-99 366.7 308 60.1
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 9.6e-99 364.4 339 54.6
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 6.2e-98 361.7 336 56.2
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 8.1e-98 361.3 337 54.9
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 2.4e-97 359.8 332 54.2
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 2.4e-97 359.8 338 54.4
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 1.5e-96 357.1 335 54.3
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 5.8e-96 355.1 332 54.5
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 5.8e-96 355.1 344 53.5
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 7.6e-96 354.8 332 54.5
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 1.0e-95 354.4 331 54.1
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 2.2e-95 353.2 337 53.4
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 2.9e-95 352.8 301 59.5
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 1.1e-94 350.9 333 53.5
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 1.8e-92 343.6 329 53.5
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 1.1e-89 334.3 332 54.2
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.4e-89 334.0 339 51.6
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 9.0e-89 331.3 304 55.6
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 3.8e-87 325.9 295 56.9
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 4.2e-86 322.4 335 51.0
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 4.6e-85 318.9 340 50.6
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 1.3e-84 317.4 333 50.8
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.3e-84 316.6 287 56.4
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 5.1e-84 315.5 340 50.3
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 1.5e-83 313.9 283 58.0
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 3.7e-82 309.3 303 53.1
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 6.3e-82 308.5 340 49.1
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 4.1e-81 305.8 240 61.2
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 5.3e-81 305.4 340 50.3
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 2.0e-80 303.5 354 48.3
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 2.0e-80 303.5 339 50.7
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 2.6e-80 303.1 334 47.3
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 3.4e-80 302.8 337 49.0
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 3.4e-80 302.8 337 49.3
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 3.4e-80 302.8 337 49.0
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 3.4e-80 302.8 337 49.3
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 3.4e-80 302.8 286 55.6
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 4.5e-80 302.4 272 58.1
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.0e-79 301.2 336 49.1
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.8e-79 299.3 247 59.1
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 6.5e-79 298.5 337 48.1
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 6.1e-77 292.0 337 48.1
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 7.9e-77 291.6 337 48.7
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 2.3e-76 290.0 337 45.4
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 3.9e-76 289.3 275 56.7
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 2.6e-75 286.6 272 52.9
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 1.3e-74 284.3 227 60.8
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 2.2e-74 283.5 273 53.5
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 3.1e-73 279.6 244 58.6
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 4.2e-70 269.2 283 51.9
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 6.1e-69 265.4 338 46.2
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 6.1e-61 238.8 272 50.0
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 2.8e-58 229.9 218 60.1
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 7.2e-54 215.3 329 38.3
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 4.4e-51 206.1 222 50.5
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 5.7e-51 205.7 335 40.9
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 8.3e-50 201.8 190 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.1e-49 201.4 330 40.3
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 1.6e-45 187.6 145 63.4
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 1.4e-44 184.5 328 38.4
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 6.8e-44 182.2 326 37.4
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 3.7e-42 176.4 326 35.9
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 4.5e-40 169.5 250 41.6
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 5.2e-36 156.0 225 44.4
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 4.4e-35 152.9 159 51.6
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 3.5e-32 143.3 222 42.3
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 7.5e-27 125.6 397 29.7
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.5e-22 111.3 233 37.3
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 8.1e-21 105.5 117 47.9
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 3.5e-16 90.1 64 56.2
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 5.1e-15 86.3 85 45.9
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-15 85.9 68 64.7
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.5e-14 84.7 59 57.6
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 7.3e-14 82.4 300 28.0
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.2e-13 81.6 63 52.4
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 1.2e-13 81.6 58 53.4
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.4e-11 73.6 191 29.8
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 4.4e-11 73.2 38 86.8
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 4.4e-11 73.2 38 86.8
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 8.4e-10 68.9 279 25.8
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 7.1e-09 65.9 63 52.4
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 4.6e-08 63.2 315 27.0
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.7e-07 61.2 182 31.9
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 7.3e-06 55.8 58 50.0
PRCOL_00006890 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 7.3e-06 55.8 298 23.2


User provided reference genes

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