Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.2e-272 942.6 471 100.0
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.1e-206 723.4 441 81.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.3e-206 721.5 442 81.2
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.0e-199 700.3 447 78.1
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.9e-199 698.4 457 78.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.6e-198 694.5 458 77.1
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-193 680.2 446 77.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.7e-191 672.9 449 75.1
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 3.9e-191 671.8 452 74.3
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.4e-182 641.0 452 72.6
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.8e-180 636.3 450 70.9
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 6.9e-180 634.4 407 77.1
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.5e-179 633.3 453 72.0
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 4.5e-179 631.7 455 72.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.7e-178 629.8 450 70.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.9e-178 629.0 451 72.5
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-177 627.1 449 69.0
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.2e-177 625.2 452 70.1
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 7.1e-177 624.4 451 68.7
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.5e-176 622.1 451 69.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.9e-175 618.6 455 70.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 5.1e-175 618.2 460 67.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.3e-174 615.5 420 72.9
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.3e-174 615.1 425 72.2
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.8e-173 612.5 475 66.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.8e-172 609.8 425 72.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.4e-172 609.4 475 66.7
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.4e-172 609.4 446 68.6
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.1e-172 609.0 447 68.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.3e-172 608.2 425 72.7
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 9.0e-172 607.4 448 69.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.5e-171 606.7 455 68.8
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.8e-171 604.7 457 68.1
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.8e-171 604.7 436 69.0
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-170 603.2 452 67.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.9e-170 601.7 452 66.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.1e-169 600.5 466 64.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.9e-169 599.7 452 66.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.2e-169 599.0 452 66.6
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 9.3e-169 597.4 438 68.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 9.3e-169 597.4 446 67.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.7e-168 595.9 444 66.2
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.7e-168 595.9 451 66.7
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.7e-168 595.9 444 67.6
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 3.5e-168 595.5 437 68.2
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 7.9e-168 594.3 447 66.9
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.8e-167 593.2 424 70.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.9e-167 592.0 441 70.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 8.7e-167 590.9 447 65.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.1e-166 590.5 438 69.4
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.1e-166 590.5 461 64.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.9e-166 589.7 448 67.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.5e-166 589.3 538 58.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 9.7e-166 587.4 456 65.4
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.2e-165 586.3 447 65.1
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.4e-164 582.8 434 66.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 9.0e-164 580.9 427 67.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 9.0e-164 580.9 457 64.8
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 9.0e-164 580.9 369 74.5
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.6e-163 579.3 423 68.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 3.4e-163 578.9 464 64.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.5e-163 578.6 489 61.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 4.5e-163 578.6 433 67.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.3e-162 577.0 423 67.8
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.2e-162 576.2 481 61.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-161 573.2 356 75.3
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.2e-161 572.4 356 75.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.5e-161 571.6 433 67.0
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.7e-160 569.3 356 74.7
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 6.1e-160 568.2 451 65.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.8e-159 566.6 454 64.3
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.8e-159 564.3 454 64.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.5e-158 563.5 500 61.4
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.3e-158 562.0 454 63.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.3e-158 562.0 454 63.9
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.3e-157 560.5 371 73.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.7e-157 558.9 371 73.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.7e-157 558.9 446 64.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.2e-157 557.8 443 63.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-156 556.6 374 72.7
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.8e-156 556.6 441 65.5
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 6.9e-156 554.7 427 64.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.4e-155 552.4 453 63.4
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 4.5e-155 552.0 508 58.9
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.7e-155 551.2 461 62.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.3e-154 550.4 449 62.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-154 550.1 460 62.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.7e-154 550.1 460 62.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.9e-154 549.3 409 68.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.9e-154 549.3 298 86.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.5e-154 548.1 462 62.1
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 6.5e-154 548.1 453 62.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.9e-153 546.6 421 65.8
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 5.5e-153 545.0 360 71.9
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.6e-152 542.3 428 65.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 7.9e-152 541.2 448 61.6
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.8e-151 537.7 350 72.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 3.7e-149 532.3 354 70.3
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.8e-148 530.0 393 67.9
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 5.3e-148 528.5 487 57.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.6e-147 526.2 392 65.8
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 2.3e-143 513.1 460 59.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.3e-143 513.1 426 61.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.9e-143 512.3 368 66.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 8.8e-143 511.1 450 58.9
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.1e-142 510.8 444 58.3
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.7e-141 505.8 462 56.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.1e-140 504.2 417 60.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.7e-139 498.0 447 59.3
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 9.4e-137 491.1 424 58.3
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.2e-136 490.7 470 53.2
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 3.3e-134 482.6 416 58.2
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 7.5e-134 481.5 458 55.2
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.0e-130 471.1 322 68.9
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.0e-130 471.1 352 63.6
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.5e-129 465.3 314 68.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.1e-128 463.4 431 56.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.4e-119 434.1 267 76.8
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.0e-118 430.3 384 57.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.3e-117 424.9 364 60.4
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 5.0e-114 415.6 444 54.1
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.3e-113 412.5 354 55.9
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.6e-113 412.1 349 56.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.6e-112 410.6 379 53.6
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.8e-111 407.1 449 52.3
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.2e-110 404.4 377 52.5
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.5e-110 404.1 422 49.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.6e-110 403.3 369 53.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.4e-110 402.9 434 47.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.8e-110 401.4 278 64.4
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.9e-109 399.8 435 47.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.9e-109 399.8 435 47.8
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 6.4e-109 398.7 435 48.0
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 6.4e-109 398.7 435 48.0
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.4e-108 397.5 368 53.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.4e-108 397.5 323 59.1
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.4e-108 396.7 397 50.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 7.0e-108 395.2 306 64.7
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.9e-106 389.4 444 48.9
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.6e-104 382.9 412 49.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.6e-104 382.9 412 49.0
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.1e-103 381.3 298 58.7
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 6.8e-103 378.6 413 48.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 6.8e-103 378.6 413 48.4
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.3e-101 371.7 228 73.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.2e-99 367.9 347 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.7e-98 364.0 428 44.9
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.6e-98 362.1 340 53.8
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-94 351.3 207 78.7
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.4e-92 344.4 207 76.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.1e-89 334.7 394 51.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 5.1e-82 309.3 298 50.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.5e-54 216.5 163 63.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.7e-51 207.2 445 35.3
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 5.1e-50 203.0 457 33.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.9e-45 187.2 124 72.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 8.5e-45 185.7 114 77.2
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.1e-44 185.3 234 48.3
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.1e-43 181.0 229 48.9
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 7.9e-43 179.1 260 36.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.9e-42 176.8 132 63.6
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.3e-41 173.7 200 49.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.9e-39 166.0 102 75.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.0e-34 152.1 83 84.3
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.7e-32 143.7 81 82.7
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.1e-27 127.9 67 88.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 4.7e-27 126.7 105 56.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.8e-26 124.8 169 50.3
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.8e-26 122.5 65 87.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.9e-22 109.8 94 57.4
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.7e-11 74.3 132 38.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.8e-07 61.6 151 31.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.8e-07 61.6 130 34.6
GSVIVG01014543001 Vitis vinifera HOM05D002303 ORTHO05D007639 5.9e-06 56.6 138 31.2


User provided reference genes

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