Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 2.4e-179 632.1 336 100.0
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.1e-136 490.3 330 80.6
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 1.4e-134 483.4 338 79.6
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.0e-121 440.7 338 75.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 5.2e-121 438.3 333 73.6
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 3.5e-117 425.6 337 73.9
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 5.9e-117 424.9 333 71.2
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 8.8e-113 411.0 335 72.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 8.3e-103 377.9 262 80.2
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.5e-83 313.9 340 55.0
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.2e-80 304.3 358 53.4
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.1e-74 283.5 327 56.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 4.0e-73 279.3 320 54.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 2.0e-72 276.9 329 52.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.9e-71 272.3 340 52.1
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 2.7e-69 266.5 337 49.3
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 4.6e-69 265.8 336 49.4
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.4e-65 254.2 344 49.1
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.0e-64 250.4 345 46.7
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.6e-64 250.0 337 51.0
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 5.8e-64 248.8 339 49.3
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.9e-63 246.5 341 46.6
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.8e-63 246.1 335 49.0
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 3.2e-62 243.0 336 47.0
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 4.2e-62 242.7 328 48.5
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 3.5e-61 239.6 349 44.1
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.6e-61 239.2 340 48.2
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.0e-61 238.8 343 49.3
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 1.7e-60 237.3 304 49.0
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.3e-60 236.9 340 47.9
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.3e-59 233.0 354 45.8
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.3e-59 232.6 352 46.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.3e-58 231.1 332 47.3
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.4e-57 226.9 332 46.7
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.4e-57 226.9 353 45.3
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.1e-57 226.5 303 51.2
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.5e-56 222.6 344 45.3
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.2e-55 220.3 337 45.1
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-54 217.6 349 44.4
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.4e-54 217.6 266 50.4
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.4e-54 216.9 354 44.9
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.7e-53 213.4 364 45.3
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.5e-53 213.0 347 43.2
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.8e-52 210.7 311 43.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.3e-52 210.3 348 44.0
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.5e-51 206.8 337 43.3
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 6.2e-50 202.2 337 41.8
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 8.1e-50 201.8 346 43.9
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.8e-49 200.7 334 42.8
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.2e-48 198.0 339 42.2
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 4.5e-48 196.1 334 42.8
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.9e-47 193.4 337 42.4
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.9e-47 193.4 290 45.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.9e-47 193.4 333 41.1
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.9e-47 192.6 278 46.4
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 6.5e-47 192.2 338 41.7
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.4e-46 191.0 331 41.7
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.9e-46 190.7 339 41.9
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.2e-46 189.9 345 40.9
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 5.5e-46 189.1 348 39.9
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 7.1e-46 188.7 339 41.9
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.7e-45 186.8 217 52.1
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 3.5e-45 186.4 338 41.4
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 3.5e-45 186.4 315 43.2
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 6.0e-45 185.7 339 40.1
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 7.9e-45 185.3 342 40.1
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 7.9e-45 185.3 339 41.0
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 7.9e-45 185.3 311 43.4
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-44 184.9 329 42.9
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.8e-44 184.1 292 43.2
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 3.9e-44 183.0 312 42.9
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 6.7e-44 182.2 336 39.3
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 6.7e-44 182.2 335 41.2
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.1e-43 181.4 312 43.3
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.1e-43 181.4 279 45.2
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 1.5e-43 181.0 357 39.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.9e-43 180.6 332 41.9
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.3e-43 179.9 327 41.0
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 7.4e-43 178.7 339 41.9
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 9.6e-43 178.3 334 40.1
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 9.6e-43 178.3 350 40.6
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-42 177.9 329 40.4
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.3e-42 177.9 333 41.7
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.6e-42 177.6 314 42.4
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 6.2e-42 175.6 333 40.2
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 6.2e-42 175.6 334 40.1
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 6.2e-42 175.6 336 39.9
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.4e-41 174.5 336 39.6
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.4e-41 174.5 270 43.3
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.4e-41 174.5 336 39.9
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.1e-41 173.3 335 40.0
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 5.3e-41 172.6 337 38.3
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.3e-41 172.6 331 39.3
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 6.9e-41 172.2 349 39.8
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 6.9e-41 172.2 296 41.2
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 6.9e-41 172.2 343 39.1
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.2e-40 171.4 341 39.0
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.2e-40 171.4 303 40.9
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.5e-40 171.0 332 41.0
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.4e-40 169.9 333 39.0
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.0e-39 168.3 314 42.0
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.9e-38 164.1 328 38.4
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.9e-38 164.1 322 41.9
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.5e-38 163.7 331 39.3
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.5e-38 163.7 336 37.8
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.5e-38 163.7 328 39.3
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.6e-37 161.0 321 40.8
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.1e-37 160.6 328 39.3
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.7e-37 160.2 272 41.5
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.3e-36 157.9 343 36.7
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.3e-36 157.9 306 39.9
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.8e-36 157.5 349 39.0
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 3.9e-36 156.4 297 38.7
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.9e-36 156.4 263 42.6
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 3.9e-36 156.4 326 38.7
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 5.1e-36 156.0 339 39.5
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.1e-35 154.8 367 37.1
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.5e-35 154.5 210 47.1
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 5.7e-35 152.5 257 42.8
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 5.7e-35 152.5 229 46.3
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 5.7e-35 152.5 210 47.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.4e-35 152.1 335 37.3
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 9.7e-35 151.8 338 37.0
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.6e-34 151.0 417 34.8
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 6.3e-34 149.1 339 36.6
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 3.1e-33 146.7 340 37.6
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 6.9e-33 145.6 312 38.5
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.4e-32 143.3 223 43.0
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.5e-31 138.7 248 38.3
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 8.5e-31 138.7 216 44.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.5e-30 137.1 248 39.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 4.2e-30 136.3 191 46.6
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 7.2e-30 135.6 269 34.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 7.9e-29 132.1 292 36.6
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.0e-28 131.7 279 35.1
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 8.8e-28 128.6 314 37.3
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 3.3e-27 126.7 320 36.2
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.7e-27 125.2 272 39.3
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.8e-26 123.6 234 38.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.8e-26 122.9 258 37.6
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.0e-23 115.2 292 36.6
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.2e-22 109.0 313 31.9
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 3.6e-21 106.7 322 31.7
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.8e-20 104.4 213 39.4
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 7.4e-19 99.0 223 38.6
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.7e-18 97.8 175 38.9
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.7e-18 97.8 71 69.0
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.2e-18 97.4 290 32.4
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 3.7e-18 96.7 335 29.9
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 9.1e-17 92.0 67 71.6
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 2.0e-16 90.9 61 70.5
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.5e-15 85.9 191 34.6
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 5.5e-14 82.8 192 34.9
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 9.7e-11 72.0 159 34.6
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 2.0e-08 64.3 55 50.9
Sabra08G0102000 Salix brachista HOM05D002346 ORTHO05D002452 2.2e-07 60.8 153 33.3
Potri.010G108200 Populus trichocarpa HOM05D002346 ORTHO05D002452 2.9e-07 60.5 168 32.1
AagrBONN_evm.TU.Sc2ySwM_117.2255 Anthoceros agrestis HOM05D002346 ORTHO05D002452 3.8e-07 60.1 150 34.0
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.8e-07 60.1 53 62.3
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 8.5e-07 58.9 185 34.1
Sabra10G0079200 Salix brachista HOM05D002346 ORTHO05D002452 1.1e-06 58.5 153 30.7
Potri.008G133400 Populus trichocarpa HOM05D002346 ORTHO05D002452 1.5e-06 58.2 153 33.3
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 1.9e-06 57.8 133 33.8
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 1.9e-06 57.8 132 33.3
Haze_10914 Corylus avellana HOM05D002346 ORTHO05D002452 5.5e-06 56.2 138 33.3
Oeu062649.1 Olea europaea HOM05D002346 ORTHO05D002452 5.5e-06 56.2 147 30.6
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 7.2e-06 55.8 54 50.0
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 7.2e-06 55.8 54 50.0
MSTRG.10497 Avicennia marina HOM05D001047 ORTHO05D000768 9.4e-06 55.5 121 34.7


User provided reference genes

Program Settings