Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 7.9e-109 397.1 202 100.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.8e-92 342.8 205 84.9
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 1.2e-91 340.1 208 83.2
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 4.4e-91 338.2 203 87.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 9.7e-91 337.0 206 83.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.1e-89 333.6 207 81.6
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 9.1e-89 330.5 208 81.2
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 7.2e-86 320.9 206 81.6
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 2.2e-82 309.3 207 80.2
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 6.3e-82 307.8 206 79.6
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 4.5e-80 301.6 205 77.6
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.6e-77 293.1 207 75.4
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.8e-77 292.4 209 74.2
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 6.1e-77 291.2 207 74.9
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 6.1e-77 291.2 209 74.2
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.0e-75 286.2 207 73.4
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 4.4e-75 285.0 203 72.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 5.7e-75 284.6 204 70.6
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 7.5e-75 284.3 206 71.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.3e-74 283.5 204 72.5
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.8e-74 282.3 204 71.6
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.8e-74 282.3 201 72.1
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 3.7e-74 282.0 209 70.3
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-73 280.4 209 72.7
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.4e-73 280.0 208 72.1
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-73 279.6 208 72.1
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 2.4e-73 279.3 210 70.5
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.1e-73 278.5 205 71.7
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.4e-73 278.1 209 69.9
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 9.2e-73 277.3 206 70.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 1.2e-72 276.9 204 70.1
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.2e-72 276.9 207 71.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 2.7e-72 275.8 204 70.1
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.5e-72 275.4 204 69.6
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 5.9e-72 274.6 208 71.6
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 5.0e-71 271.6 202 71.3
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 8.6e-71 270.8 207 69.6
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.1e-70 270.4 204 71.6
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.5e-70 270.0 207 71.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.5e-70 269.2 205 70.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.5e-70 269.2 204 70.6
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 3.3e-70 268.9 207 70.5
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.2e-69 266.9 204 69.1
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 8.0e-69 264.2 204 68.1
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.0e-68 263.8 204 68.6
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.0e-68 263.8 204 69.6
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.0e-68 263.8 201 69.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 2.3e-68 262.7 193 71.5
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.3e-68 262.7 201 70.6
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.3e-68 262.7 204 68.6
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 2.3e-68 262.7 203 67.5
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 3.1e-68 262.3 204 69.1
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 3.1e-68 262.3 198 69.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 3.1e-68 262.3 208 69.2
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 5.2e-68 261.5 208 68.8
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 2.6e-67 259.2 204 67.2
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 4.4e-67 258.5 204 67.2
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 5.8e-67 258.1 204 68.6
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 9.8e-67 257.3 204 68.6
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.3e-66 256.9 217 63.6
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.3e-66 256.9 199 70.4
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.7e-66 256.5 204 66.7
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 3.7e-66 255.4 204 68.1
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.9e-66 255.0 191 69.6
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 6.4e-66 254.6 204 69.1
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 6.4e-66 254.6 207 68.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.4e-66 254.6 204 69.1
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 8.3e-66 254.2 204 67.2
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.1e-65 251.9 204 66.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 7.0e-65 251.1 204 68.6
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.6e-64 250.0 192 67.2
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 2.0e-64 249.6 201 67.2
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 2.0e-64 249.6 201 67.2
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 3.5e-64 248.8 141 84.4
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 4.6e-64 248.4 199 67.8
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 4.6e-64 248.4 194 71.1
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 6.0e-64 248.1 204 66.2
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 7.8e-64 247.7 203 66.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.0e-63 247.3 122 91.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-63 246.9 202 66.3
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 1.3e-63 246.9 186 71.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.3e-63 246.9 198 68.7
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.7e-63 246.5 195 68.7
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.7e-63 246.5 197 68.5
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 6.6e-63 244.6 197 68.0
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 8.6e-63 244.2 207 65.7
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.1e-62 243.8 204 67.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.5e-62 243.4 189 67.2
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 5.6e-62 241.5 154 77.3
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 7.3e-62 241.1 200 63.5
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 2.1e-61 239.6 146 80.8
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-61 239.6 146 80.8
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 6.2e-61 238.0 210 63.3
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.1e-60 237.3 214 58.9
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.4e-60 236.9 201 64.7
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.8e-60 236.5 184 69.0
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-60 236.1 146 80.1
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 2.6e-59 232.6 204 65.2
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.5e-59 231.1 151 76.8
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 9.8e-59 230.7 204 64.7
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 9.8e-59 230.7 199 65.3
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.9e-57 226.5 203 63.1
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.1e-56 223.0 159 67.9
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.1e-56 223.0 208 62.0
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 6.6e-55 218.0 110 87.3
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.3e-54 214.5 191 61.8
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 9.5e-54 214.2 203 62.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 3.6e-53 212.2 133 75.9
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 3.1e-52 209.1 127 79.5
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 7.6e-51 204.5 214 52.8
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.3e-50 203.8 131 71.8
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.9e-50 201.8 157 70.1
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.4e-49 200.3 205 58.5
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 7.1e-49 198.0 160 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.0e-47 194.1 116 75.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.7e-47 193.4 108 83.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.9e-47 192.2 95 90.5
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.2e-45 187.2 91 92.3
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.1e-44 182.6 160 65.0
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 4.9e-34 148.7 82 80.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 7.3e-30 134.8 101 57.4
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 8.1e-29 131.3 204 44.1
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 2.6e-27 126.3 128 58.6
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.7e-26 123.6 122 60.7
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 7.1e-25 118.2 59 88.1
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 2.3e-23 113.2 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 4.0e-20 102.4 106 47.2
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.9e-18 96.3 207 42.0
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-17 92.8 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 7.4e-14 81.6 113 38.9
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.6e-13 80.5 62 62.9
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.4e-11 72.8 35 88.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-10 70.9 88 45.5
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.7e-08 63.2 107 45.8
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 6.7e-07 58.5 83 43.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 4.3e-06 55.8 34 70.6
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 9.7e-06 54.7 28 78.6


User provided reference genes

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