Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.0e-117 426.0 256 100.0
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.8e-97 359.8 246 89.0
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 4.7e-90 335.1 254 80.3
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 4.7e-90 335.1 247 78.9
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 8.0e-90 334.3 254 72.8
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 2.3e-89 332.8 254 72.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 8.3e-87 324.3 254 71.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.2e-85 320.5 254 70.9
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 2.7e-85 319.3 223 80.3
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 3.8e-84 315.5 254 71.3
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.2e-82 310.5 254 70.1
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.7e-79 300.1 254 74.4
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.7e-79 300.1 255 66.3
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 8.6e-76 287.7 253 64.4
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 2.5e-75 286.2 255 64.3
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.2e-74 283.9 253 63.2
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.6e-74 283.5 255 65.1
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.7e-74 282.0 255 64.3
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.8e-73 278.1 251 62.9
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.2e-72 277.3 255 61.6
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.5e-72 276.9 255 62.0
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.0e-72 276.6 255 63.5
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.4e-72 275.8 255 63.5
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 7.5e-72 274.6 254 63.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.7e-71 273.5 249 63.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.7e-71 272.3 249 65.1
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 4.9e-71 271.9 255 61.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 4.9e-71 271.9 259 62.2
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-70 270.8 255 62.4
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.4e-70 269.6 255 60.8
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.4e-70 269.6 246 61.8
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 4.1e-70 268.9 255 62.0
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 7.0e-70 268.1 252 62.7
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.1e-69 266.5 253 62.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.1e-69 266.5 255 60.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 2.1e-69 266.5 255 62.7
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.3e-68 263.1 249 61.8
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 8.6e-68 261.2 251 62.2
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 5.6e-67 258.5 259 59.5
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.2e-66 257.3 248 60.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-66 257.3 251 60.2
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.1e-66 256.5 255 58.4
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.1e-66 256.5 251 64.1
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.8e-66 256.1 251 59.8
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.6e-66 255.8 284 54.6
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 4.7e-66 255.4 276 58.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 6.2e-66 255.0 257 59.1
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 8.1e-66 254.6 250 59.6
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.4e-65 253.8 255 59.6
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.4e-65 253.8 259 59.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.4e-65 253.8 251 60.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.3e-65 253.1 251 59.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.1e-65 252.7 229 65.1
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 4.0e-65 252.3 249 60.2
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 6.8e-65 251.5 255 61.2
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 8.9e-65 251.1 255 60.8
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 8.9e-65 251.1 247 59.9
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 8.9e-65 251.1 247 61.1
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 8.9e-65 251.1 253 60.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.2e-64 250.8 249 61.0
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.4e-64 249.2 247 59.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 4.4e-64 248.8 254 57.9
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.4e-64 248.8 251 60.2
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 5.8e-64 248.4 254 58.7
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.5e-64 248.1 257 58.8
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 9.9e-64 247.7 254 57.9
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 9.9e-64 247.7 247 60.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.3e-63 247.3 259 59.8
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.2e-63 246.5 250 56.8
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 2.9e-63 246.1 251 59.0
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.4e-63 245.0 256 58.2
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.1e-62 244.2 247 59.1
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.9e-62 243.4 248 61.3
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.1e-62 242.3 254 57.5
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 5.4e-62 241.9 254 56.3
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.4e-62 241.9 253 54.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 5.4e-62 241.9 251 59.0
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 9.2e-62 241.1 249 59.4
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-61 240.7 256 57.8
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.1e-61 240.0 249 59.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.7e-61 239.6 249 56.2
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.0e-60 237.7 252 59.1
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.3e-60 237.3 254 56.7
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 3.0e-60 236.1 251 57.8
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 8.6e-60 234.6 249 59.0
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.1e-59 234.2 258 56.6
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.1e-59 234.2 251 58.2
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.5e-59 233.8 250 59.6
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.5e-59 233.0 301 51.5
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 7.3e-59 231.5 257 55.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.2e-58 230.7 249 56.2
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.6e-58 230.3 152 80.3
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.8e-58 229.6 250 56.4
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 4.7e-58 228.8 255 54.5
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 4.7e-58 228.8 227 59.9
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.2e-58 228.4 154 79.9
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 8.1e-58 228.0 251 59.4
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.1e-57 227.6 255 55.7
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 5.2e-57 225.3 255 54.5
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-56 224.2 255 54.5
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.0e-56 223.4 256 53.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 5.8e-56 221.9 257 53.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 5.8e-56 221.9 247 57.1
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.9e-56 221.1 157 73.2
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.3e-55 220.7 255 53.7
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-55 219.9 158 74.1
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.1e-54 217.6 255 52.9
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.1e-54 217.6 254 54.7
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.4e-54 216.5 257 60.3
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.6e-53 212.2 303 46.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.3e-52 209.9 252 52.0
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.6e-52 208.4 178 66.3
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.6e-52 208.4 252 51.6
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.2e-50 204.1 216 57.9
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.5e-48 197.2 266 48.1
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 4.9e-47 192.2 244 54.1
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 6.0e-45 185.3 145 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 3.0e-44 183.0 278 43.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.9e-44 182.6 254 48.0
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 2.3e-36 156.8 279 40.1
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.5e-35 153.3 95 83.2
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.6e-34 150.6 148 62.2
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 3.7e-34 149.4 135 62.2
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.4e-32 142.9 99 74.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 9.9e-32 141.4 194 47.9
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.1e-30 137.9 180 52.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.9e-30 137.1 269 42.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.5e-30 135.6 173 50.3
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 4.6e-29 132.5 205 47.8
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.4e-25 120.9 181 46.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 7.4e-19 98.6 124 45.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.6e-18 97.4 154 46.8
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 4.8e-18 95.9 227 37.9
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 3.1e-17 93.2 98 58.2
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 5.3e-17 92.4 66 78.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.2e-15 87.0 55 76.4
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.2e-13 81.3 58 72.4
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.8e-12 77.4 63 63.5
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 5.7e-11 72.4 67 59.7
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 1.1e-09 68.2 94 47.9
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.7e-07 60.8 40 70.0
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 5.0e-07 59.3 86 43.0
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-06 58.2 131 36.6
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.1e-06 58.2 170 31.8
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.5e-06 57.0 85 43.5


User provided reference genes

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