Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.1e-49 196.8 104 100.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 6.5e-30 134.0 78 89.7
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 4.1e-24 114.8 78 75.6
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 5.3e-24 114.4 78 76.9
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 9.0e-24 113.6 78 76.9
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 3.4e-23 111.7 77 77.9
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.7e-22 109.4 77 76.6
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 5.5e-21 104.4 79 73.4
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.7e-20 102.1 79 72.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.7e-18 94.4 79 67.1
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 7.4e-18 94.0 80 68.8
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.8e-17 92.0 84 63.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.9e-16 87.4 79 65.8
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 2.0e-15 85.9 80 57.5
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-14 83.2 80 57.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.0e-14 81.3 86 55.8
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-13 80.1 81 53.1
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.9e-13 79.3 80 53.8
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.5e-13 79.0 80 52.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 4.2e-13 78.2 81 53.1
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 5.5e-13 77.8 80 51.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 9.4e-13 77.0 80 51.2
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 9.4e-13 77.0 76 55.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.1e-12 75.9 81 54.3
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.1e-12 75.9 80 53.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.7e-12 75.5 92 51.1
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.7e-12 75.5 81 50.6
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.7e-12 75.5 80 56.2
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 3.6e-12 75.1 93 50.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.6e-12 75.1 80 50.0
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.6e-12 74.7 79 50.6
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 4.6e-12 74.7 80 51.2
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.1e-12 74.3 79 50.6
Ca_23751_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 6.1e-12 74.3 49 77.6
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 6.1e-12 74.3 49 77.6
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.9e-12 73.9 80 51.2
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.0e-11 73.6 80 50.0
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-11 73.6 78 48.7
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.4e-11 73.2 81 53.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.8e-11 72.8 79 49.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.8e-11 72.8 80 52.5
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.8e-11 72.8 81 46.9
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-11 72.8 81 46.9
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-11 72.8 81 46.9
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.0e-11 72.0 81 53.1
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 5.1e-11 71.2 81 50.6
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 5.1e-11 71.2 81 53.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 6.7e-11 70.9 80 50.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.8e-11 70.5 81 53.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.8e-11 70.5 81 53.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 8.8e-11 70.5 81 53.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-10 70.1 81 53.1
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.1e-10 70.1 80 48.8
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-10 69.7 81 50.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.0e-10 69.3 81 50.6
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.3e-10 68.6 81 44.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.3e-10 68.6 81 44.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.3e-10 68.6 80 50.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 5.7e-10 67.8 68 55.9
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.7e-10 67.8 81 51.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.7e-10 67.0 81 49.4
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.3e-09 66.6 79 48.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.7e-09 66.2 79 50.6
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.7e-09 66.2 79 50.6
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.7e-09 66.2 80 48.8
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.2e-09 65.9 76 52.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.8e-09 65.5 76 53.9
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.8e-09 64.7 91 42.9
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.8e-09 64.7 83 49.4
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 8.2e-09 63.9 79 45.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.4e-08 63.2 81 46.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.4e-08 63.2 81 44.4
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 6.9e-08 60.8 78 47.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 9.1e-08 60.5 79 40.5
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 9.1e-08 60.5 79 43.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.2e-07 60.1 104 36.5
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.5e-07 59.7 79 48.1
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.0e-07 59.3 79 44.3
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.9e-07 57.8 57 54.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.3e-06 56.6 79 45.6
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.7e-06 56.2 78 43.6
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.7e-06 56.2 76 47.4
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.0e-06 54.7 76 46.1


User provided reference genes

Program Settings