Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.7e-61 237.7 119 100.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.3e-49 196.8 118 80.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.3e-47 193.0 118 78.8
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.3e-46 187.2 118 78.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.8e-45 185.3 119 78.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 3.6e-45 184.9 118 76.3
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.6e-45 184.9 116 75.0
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 4.8e-45 184.5 118 77.1
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 8.1e-45 183.7 117 73.5
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.1e-44 183.3 118 76.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-44 182.6 117 73.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 6.9e-44 180.6 119 78.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 9.0e-44 180.3 114 73.7
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.2e-43 179.9 116 73.3
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-43 179.5 116 73.3
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.5e-43 179.5 116 72.4
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 3.4e-43 178.3 116 73.3
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 5.8e-43 177.6 116 71.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.8e-43 177.6 116 71.6
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.8e-43 177.6 116 71.6
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.9e-43 176.8 116 71.6
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.9e-43 176.8 117 74.4
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.3e-42 176.4 116 71.6
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.3e-42 176.4 116 72.4
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.2e-42 175.6 116 71.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.2e-42 175.6 115 71.3
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.9e-42 175.3 116 69.8
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-42 174.9 116 71.6
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.9e-42 174.5 116 71.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 4.9e-42 174.5 116 69.0
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.4e-42 174.1 116 69.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.4e-42 174.1 116 70.7
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.4e-42 174.1 116 69.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 8.4e-42 173.7 116 71.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-41 173.3 116 70.7
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.2e-41 171.8 116 69.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 4.2e-41 171.4 116 70.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.2e-41 171.4 117 67.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.1e-41 170.6 116 68.1
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 7.1e-41 170.6 116 69.8
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 9.3e-41 170.2 116 70.7
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.2e-40 169.9 116 67.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.6e-40 169.5 116 68.1
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.6e-40 169.5 116 69.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.6e-40 169.5 115 71.3
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.7e-40 168.7 116 67.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.7e-40 168.7 114 69.3
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.5e-40 168.3 116 67.2
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.5e-40 168.3 116 67.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 3.5e-40 168.3 116 65.5
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 3.5e-40 168.3 116 65.5
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.6e-40 167.9 116 66.4
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 4.6e-40 167.9 116 67.2
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 6.0e-40 167.5 114 71.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 7.9e-40 167.2 117 68.4
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.0e-39 166.8 116 68.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.0e-39 166.8 116 69.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.0e-39 166.8 114 70.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.3e-39 166.4 116 66.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.3e-39 165.6 114 70.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.3e-39 165.6 114 70.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.3e-39 165.6 113 69.0
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 3.0e-39 165.2 114 69.3
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.0e-39 165.2 114 70.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 3.9e-39 164.9 114 69.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 3.9e-39 164.9 113 68.1
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.9e-39 164.9 114 72.8
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 5.1e-39 164.5 116 68.1
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 8.7e-39 163.7 114 69.3
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.1e-38 163.3 116 70.7
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.1e-38 163.3 109 71.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.5e-38 162.9 118 69.5
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.5e-38 162.2 116 69.8
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 3.3e-38 161.8 112 72.3
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.6e-38 161.0 116 65.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 7.4e-38 160.6 116 66.4
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 9.6e-38 160.2 116 63.8
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.3e-37 159.8 115 64.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.3e-37 159.8 109 70.6
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-37 159.5 114 69.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-37 159.5 114 69.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.1e-37 159.1 117 65.8
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.7e-37 158.3 116 63.8
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 6.2e-37 157.5 116 64.7
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.8e-36 156.0 109 68.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.4e-36 155.6 109 67.9
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.4e-36 155.6 118 60.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 6.9e-36 154.1 114 65.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 6.9e-36 154.1 114 65.8
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-35 153.3 105 69.5
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.5e-35 152.9 116 62.9
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-35 152.9 112 62.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.0e-35 152.5 116 57.8
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.4e-35 151.8 118 63.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.4e-35 151.8 116 59.5
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.4e-35 151.8 116 60.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 4.5e-35 151.4 114 65.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 4.5e-35 151.4 109 67.9
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.6e-35 150.6 97 74.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-34 150.2 115 60.9
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.3e-34 149.8 109 62.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.3e-34 149.8 116 61.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.2e-34 149.1 112 61.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.2e-34 149.1 109 62.4
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.8e-34 148.3 116 61.2
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.8e-34 148.3 116 61.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.8e-34 148.3 116 60.3
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.9e-34 147.9 116 56.9
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.5e-34 147.5 116 56.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 8.4e-34 147.1 114 59.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 8.4e-34 147.1 112 63.4
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 8.4e-34 147.1 116 56.9
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-33 146.4 116 59.5
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.9e-33 146.0 112 58.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.2e-33 145.2 116 55.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.5e-33 144.4 116 56.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 7.1e-33 144.1 114 61.4
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.1e-33 144.1 112 58.0
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.1e-33 144.1 116 56.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 7.1e-33 144.1 119 57.1
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.6e-32 142.9 114 58.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.6e-32 142.9 117 58.1
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.6e-32 142.9 116 55.2
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.1e-32 142.5 119 58.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.7e-32 142.1 117 57.3
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.6e-32 141.4 112 58.9
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.6e-32 141.4 109 59.6
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 6.0e-32 141.0 113 57.5
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.8e-31 139.4 94 68.1
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.9e-31 138.3 118 51.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-30 135.6 116 52.6
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 3.3e-30 135.2 116 52.6
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 7.4e-30 134.0 88 72.7
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.1e-28 130.2 116 51.7
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-28 129.8 116 52.6
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.4e-28 129.0 118 50.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 9.0e-28 127.1 116 50.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.0e-27 125.9 116 50.9
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.6e-27 125.6 114 51.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 4.5e-27 124.8 113 54.9
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.8e-27 124.4 115 50.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.8e-27 124.4 115 50.4
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.5e-25 119.0 114 51.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.3e-25 117.1 116 47.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 3.5e-24 115.2 114 46.5
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.0e-23 112.1 108 45.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.0e-20 100.5 82 59.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 5.0e-18 94.7 98 42.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.5e-18 94.0 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.4e-15 86.7 106 41.5
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 8.8e-15 84.0 87 40.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.8e-13 79.0 98 37.8
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.8e-13 78.2 70 51.4
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.2e-11 73.6 88 38.6
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.0e-11 72.8 91 37.4
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.7e-08 62.4 68 39.7


User provided reference genes

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