Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.2e-84 316.6 176 100.0
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.4e-69 265.8 178 83.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 3.6e-65 251.9 179 79.3
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.3e-62 243.4 178 81.5
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.7e-62 243.0 178 76.4
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 8.3e-62 240.7 180 77.2
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 3.1e-61 238.8 178 75.3
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 9.2e-61 237.3 185 69.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.6e-59 231.1 185 73.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.5e-58 229.2 178 73.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.4e-56 223.4 184 68.5
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.4e-56 223.4 179 70.4
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 9.8e-55 217.2 178 68.5
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.1e-53 211.8 192 66.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 7.0e-53 211.1 192 66.1
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.6e-52 209.9 195 68.7
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 4.6e-52 208.4 180 68.3
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.0e-51 207.2 183 69.4
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.3e-51 206.1 187 67.4
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 5.0e-51 204.9 189 66.1
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.5e-50 202.6 192 66.1
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 3.3e-50 202.2 196 64.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 8.0e-49 197.6 176 64.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.2e-47 193.7 187 64.7
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.5e-47 193.4 188 65.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.4e-47 192.2 178 62.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.4e-47 192.2 181 67.4
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 4.4e-47 191.8 198 63.1
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.7e-46 189.9 184 62.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.2e-46 189.5 190 63.2
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.3e-46 187.6 178 65.7
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 8.3e-46 187.6 182 64.3
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.4e-45 186.0 180 58.3
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.4e-45 186.0 191 62.8
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 4.1e-45 185.3 191 59.7
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.1e-45 185.3 179 60.3
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 4.1e-45 185.3 179 59.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.4e-45 184.9 189 63.5
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.4e-45 184.9 191 63.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-44 183.7 188 61.7
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.2e-44 183.7 187 61.0
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.7e-44 182.6 191 61.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.0e-44 181.4 178 61.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 7.8e-44 181.0 181 59.7
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.0e-43 180.6 181 61.3
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.0e-43 179.1 195 54.4
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.0e-43 178.3 193 57.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.6e-43 177.9 180 60.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 8.6e-43 177.6 186 61.8
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.1e-42 177.2 178 60.7
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.1e-42 177.2 186 63.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.1e-42 177.2 194 57.2
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.1e-42 177.2 181 59.1
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.9e-42 176.4 185 61.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.5e-42 176.0 189 61.9
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 2.5e-42 176.0 178 57.9
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 3.3e-42 175.6 189 60.3
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.3e-42 175.3 187 59.9
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 5.6e-42 174.9 191 61.8
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 9.5e-42 174.1 187 61.5
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.5e-42 174.1 173 63.6
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 9.5e-42 174.1 193 57.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.2e-41 173.7 173 60.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.2e-41 173.7 147 64.6
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.6e-41 173.3 183 59.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-41 173.3 147 62.6
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.1e-41 172.9 183 64.5
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.8e-41 172.6 181 64.6
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.8e-41 172.6 186 59.1
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.7e-41 171.8 176 64.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.7e-41 171.8 190 61.1
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.2e-41 171.4 194 60.8
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 8.1e-41 171.0 182 64.3
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 8.1e-41 171.0 194 60.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.1e-40 170.6 188 54.3
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.8e-40 169.9 180 60.6
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.8e-40 169.9 193 54.9
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 3.1e-40 169.1 177 58.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.0e-40 168.7 188 54.3
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.0e-40 168.7 193 54.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 6.8e-40 167.9 184 58.7
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 6.8e-40 167.9 174 54.6
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 8.9e-40 167.5 181 60.8
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-39 167.2 187 55.1
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.2e-39 167.2 178 59.6
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.2e-39 167.2 138 64.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 178 62.4
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.5e-39 166.8 173 57.8
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.0e-39 166.4 183 56.8
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-39 166.0 178 59.0
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.4e-39 165.6 180 62.8
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 4.4e-39 165.2 186 58.6
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 4.4e-39 165.2 172 59.3
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.8e-39 164.9 162 64.2
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 7.5e-39 164.5 178 58.4
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.3e-38 163.7 176 59.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.3e-38 163.7 193 56.5
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.7e-38 163.3 177 58.8
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.7e-38 163.3 177 58.8
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.9e-38 162.5 179 55.3
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 3.7e-38 162.2 177 57.1
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 3.7e-38 162.2 177 57.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.7e-38 162.2 177 54.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 4.9e-38 161.8 184 54.9
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 4.9e-38 161.8 184 60.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 6.4e-38 161.4 177 57.1
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 6.4e-38 161.4 147 63.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.1e-37 160.6 182 59.9
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.4e-37 160.2 186 54.8
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.9e-37 159.8 177 58.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.4e-37 159.5 136 63.2
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 5.4e-37 158.3 186 59.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.4e-37 158.3 181 59.7
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 6.0e-36 154.8 184 51.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 7.8e-36 154.5 124 67.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.3e-35 153.7 174 55.2
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.3e-35 153.7 212 53.8
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.3e-35 153.7 85 87.1
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.7e-35 153.3 138 61.6
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.1e-34 150.6 201 46.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.5e-34 150.2 168 58.3
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 9.5e-34 147.5 155 54.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.6e-33 146.7 95 75.8
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.9e-29 133.3 164 49.4
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 2.3e-27 126.3 75 78.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.5e-26 122.9 70 80.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 5.6e-26 121.7 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.2e-23 114.0 157 49.0
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.5e-23 113.6 120 56.7
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.4e-23 112.5 98 63.3
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 2.2e-22 109.8 84 63.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 3.2e-21 105.9 141 49.6
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 7.1e-21 104.8 66 78.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.7e-20 102.8 71 76.1
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 7.8e-20 101.3 139 46.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 3.6e-17 92.4 82 53.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.4e-16 90.5 114 50.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.4e-16 90.5 170 43.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.8e-16 90.1 142 43.0
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 4.0e-16 89.0 80 51.2
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 5.3e-16 88.6 154 42.9
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.3e-14 84.0 83 61.4
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.1e-08 64.3 67 47.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 5.8e-07 58.5 39 61.5


User provided reference genes

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