Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 8.5e-145 516.9 250 100.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.2e-128 461.5 250 89.2
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.2e-119 433.3 251 82.1
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.0e-118 428.3 251 82.1
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 8.9e-118 427.2 250 82.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 8.9e-118 427.2 252 81.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 4.4e-117 424.9 252 79.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 7.0e-115 417.5 252 80.6
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.4e-102 376.7 250 75.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 8.9e-102 374.0 247 73.7
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 4.4e-101 371.7 243 73.7
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.4e-99 366.7 254 70.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.4e-99 365.9 254 70.1
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.4e-99 365.9 243 72.8
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 5.4e-99 364.8 250 72.8
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.6e-98 363.2 255 70.6
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 2.1e-98 362.8 221 77.4
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.1e-98 362.8 250 70.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 7.8e-98 360.9 254 68.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.0e-97 360.5 243 71.2
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.7e-97 359.8 256 69.9
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.7e-97 359.8 219 76.7
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.3e-97 359.4 209 80.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 3.0e-97 359.0 223 77.1
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 6.6e-97 357.8 221 76.0
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 8.6e-97 357.5 207 79.2
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.1e-96 357.1 209 79.4
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.9e-96 356.3 221 74.7
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.9e-96 356.3 221 74.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.9e-96 356.3 257 69.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.3e-96 355.1 217 75.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 5.6e-96 354.8 238 69.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 5.6e-96 354.8 221 75.1
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.1e-95 352.8 209 78.0
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.2e-95 351.3 223 76.7
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.4e-94 350.1 209 78.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.4e-94 350.1 245 69.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.8e-94 349.7 250 67.6
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-94 349.7 250 67.6
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.8e-94 349.7 220 72.7
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.8e-94 349.7 202 80.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.8e-94 349.7 207 79.2
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.3e-94 349.4 202 80.2
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 4.0e-94 348.6 220 73.2
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.2e-94 348.2 249 67.9
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 6.8e-94 347.8 203 80.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 6.8e-94 347.8 203 80.8
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.5e-93 346.7 252 67.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.0e-93 346.3 199 79.9
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.6e-93 345.9 250 67.6
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.6e-93 345.9 219 75.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.4e-93 345.5 243 69.1
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-93 345.5 243 69.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-93 345.5 243 69.1
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 3.4e-93 345.5 247 68.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 7.6e-93 344.4 247 68.4
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.2e-92 342.8 208 76.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.8e-92 342.0 251 66.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.9e-92 341.7 209 75.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 8.4e-92 340.9 202 76.2
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.9e-91 339.7 220 72.3
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.4e-91 339.3 226 71.7
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 245 64.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.7e-90 335.9 198 76.8
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 2.7e-90 335.9 199 76.9
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 3.5e-90 335.5 207 74.9
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 3.5e-90 335.5 220 72.7
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.6e-90 335.1 201 76.6
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 6.0e-90 334.7 251 65.3
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.0e-90 334.7 250 64.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.0e-89 334.0 223 72.2
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.7e-89 333.2 210 71.4
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 3.9e-89 332.0 202 74.8
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 5.1e-89 331.6 198 76.8
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 201 75.6
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-88 330.5 212 70.8
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.5e-88 330.1 202 74.3
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 219 71.2
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.5e-88 329.3 246 63.8
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 3.3e-88 328.9 202 73.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 3.3e-88 328.9 202 73.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 4.3e-88 328.6 202 73.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 4.3e-88 328.6 202 73.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 5.6e-88 328.2 206 71.8
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.6e-88 328.2 206 72.3
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 5.6e-88 328.2 206 71.8
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 7.3e-88 327.8 202 73.3
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.6e-87 326.6 194 77.3
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.6e-87 326.6 202 73.3
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-87 326.2 202 72.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 2.8e-87 325.9 206 71.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.8e-87 325.9 206 71.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 6.2e-87 324.7 246 62.6
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.1e-86 323.9 201 74.1
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 197 76.1
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.1e-86 322.4 201 72.6
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 5.2e-86 321.6 201 72.6
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.4e-85 318.9 205 71.2
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-85 318.5 290 56.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 7.6e-85 317.8 202 72.8
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.3e-84 317.0 192 74.5
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 3.8e-84 315.5 251 64.9
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.7e-82 309.3 245 64.9
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.7e-82 309.3 306 53.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.0e-81 307.4 172 82.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 9.3e-75 284.3 148 90.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 4.6e-74 282.0 213 61.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 8.1e-71 271.2 294 51.0
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.9e-67 260.0 172 69.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 5.1e-65 251.9 136 86.8
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-63 246.9 278 50.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-60 237.3 173 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.5e-59 233.0 181 59.1
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 7.1e-59 231.5 208 53.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-56 224.2 204 55.9
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.5e-56 223.8 193 52.8
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.3e-55 220.7 119 89.1
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.3e-55 220.7 146 69.9
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 4.3e-48 195.7 190 46.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 9.7e-48 194.5 198 50.5
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.8e-47 192.2 154 58.4
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 6.3e-47 191.8 106 86.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 6.9e-46 188.3 133 70.7
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 7.7e-45 184.9 99 89.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 5.0e-44 182.2 169 53.3
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.9e-43 180.3 118 67.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.7e-42 176.4 99 85.9
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 7.9e-42 174.9 99 80.8
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-38 164.5 97 81.4
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.2e-37 161.0 106 67.0
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.9e-35 153.7 87 85.1
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 5.3e-30 135.6 84 69.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 9.1e-30 134.8 84 66.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-26 124.4 183 42.1
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.1e-26 123.6 184 36.4
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 6.1e-26 122.1 101 55.4
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 3.0e-25 119.8 102 63.7
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 8.8e-25 118.2 77 72.7
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.2e-24 117.9 89 65.2
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.2e-24 117.9 92 64.1
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.5e-24 117.5 89 64.0
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-24 117.5 89 64.0
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 4.4e-24 115.9 88 64.8
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.7e-20 104.0 72 63.9
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 8.5e-20 101.7 83 60.2
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 8.0e-18 95.1 173 32.4
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 2.8e-15 86.7 90 56.7
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 4.8e-15 85.9 51 70.6
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.8e-14 84.0 117 32.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.7e-13 80.1 44 81.8
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.7e-13 80.1 44 81.8
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.7e-13 80.1 48 77.1
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 8.6e-12 75.1 42 85.7
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.6e-10 70.9 56 62.5
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.8e-10 70.1 55 61.8
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 8.0e-10 68.6 56 48.2
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.4e-09 67.8 117 35.9
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 2.3e-09 67.0 42 71.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.3e-09 67.0 47 66.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-09 65.9 40 72.5
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 5.7e-08 62.4 56 44.6
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 4.1e-06 56.2 40 55.0


User provided reference genes

Program Settings