Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 1.4e-73 279.6 150 100.0
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.5e-59 233.0 156 82.1
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 2.8e-58 228.8 157 80.9
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 4.7e-58 228.0 152 80.3
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 3.4e-48 195.3 157 71.3
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 7.6e-48 194.1 156 71.2
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 9.9e-48 193.7 153 71.2
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 3.2e-46 188.7 153 69.9
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 5.4e-46 188.0 154 69.5
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 9.3e-46 187.2 157 69.4
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 6.9e-41 171.0 157 66.2
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 3.3e-35 152.1 162 59.3
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 3.3e-35 152.1 162 59.3
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 2.8e-34 149.1 151 62.3
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 2.8e-34 149.1 151 62.3
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 1.2e-32 143.7 175 54.3
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.5e-32 143.3 127 66.9
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 4.5e-32 141.7 172 54.7
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 2.2e-31 139.4 172 55.2
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 2.2e-31 139.4 172 55.2
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.2e-31 139.4 129 65.9
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 2.9e-31 139.0 162 56.2
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 6.4e-31 137.9 137 64.2
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 1.1e-30 137.1 134 62.7
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.1e-30 137.1 113 67.3
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 1.4e-30 136.7 124 63.7
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.9e-30 136.3 133 63.9
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.9e-30 136.3 162 56.8
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 4.2e-30 135.2 137 62.8
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 1.6e-29 133.3 130 59.2
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.6e-29 133.3 165 52.7
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 2.1e-29 132.9 164 54.3
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 2.1e-29 132.9 146 57.5
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 2.1e-29 132.9 139 61.2
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.7e-29 132.5 128 64.1
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 6.0e-29 131.3 127 63.0
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 6.0e-29 131.3 134 62.7
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 7.9e-29 131.0 148 56.8
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.0e-28 130.6 160 53.1
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.0e-28 130.6 145 54.5
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 1.0e-28 130.6 131 61.8
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.0e-28 130.6 108 67.6
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 1.0e-28 130.6 137 60.6
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 1.0e-28 130.6 87 81.6
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.3e-28 130.2 133 58.6
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.3e-28 130.2 133 58.6
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 1.8e-28 129.8 172 50.0
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.3e-28 129.4 116 65.5
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 3.0e-28 129.0 172 53.5
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 5.1e-28 128.3 155 52.3
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.7e-28 127.9 152 55.9
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 6.7e-28 127.9 165 50.9
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 8.7e-28 127.5 84 79.8
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 8.7e-28 127.5 147 55.1
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 1.1e-27 127.1 139 56.8
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 1.1e-27 127.1 89 75.3
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.1e-27 127.1 89 75.3
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 1.1e-27 127.1 174 50.0
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 1.5e-27 126.7 100 74.0
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 1.5e-27 126.7 163 54.6
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.5e-27 126.7 184 47.8
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 1.5e-27 126.7 98 70.4
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.9e-27 126.3 96 71.9
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.9e-27 126.3 96 71.9
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 1.9e-27 126.3 121 63.6
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.9e-27 126.3 109 66.1
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.9e-27 126.3 109 66.1
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.9e-27 126.3 86 81.4
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.9e-27 126.3 109 67.9
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 1.9e-27 126.3 126 61.1
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 2.5e-27 125.9 90 74.4
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.5e-27 125.9 127 56.7
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 3.3e-27 125.6 165 49.1
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 3.3e-27 125.6 92 70.7
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 3.3e-27 125.6 149 55.7
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.3e-27 125.6 139 56.8
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.3e-27 125.6 99 67.7
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 4.3e-27 125.2 87 77.0
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 5.6e-27 124.8 96 70.8
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 7.4e-27 124.4 112 66.1
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 7.4e-27 124.4 165 49.7
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 9.6e-27 124.0 140 52.9
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 1.3e-26 123.6 138 58.0
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.3e-26 123.6 165 48.5
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 1.6e-26 123.2 169 50.3
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.6e-26 123.2 110 68.2
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 1.6e-26 123.2 93 72.0
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 2.1e-26 122.9 163 50.3
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 2.8e-26 122.5 137 56.2
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 2.8e-26 122.5 137 56.2
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 6.2e-26 121.3 138 57.2
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 6.2e-26 121.3 96 68.8
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 8.2e-26 120.9 105 63.8
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 8.2e-26 120.9 168 50.0
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 8.2e-26 120.9 168 50.0
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 8.2e-26 120.9 127 59.1
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.1e-25 120.6 182 47.3
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 1.1e-25 120.6 138 55.8
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 1.4e-25 120.2 86 73.3
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 3.1e-25 119.0 148 57.4
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 1.2e-24 117.1 143 52.4
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 1.2e-24 117.1 113 56.6
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 1.5e-24 116.7 168 44.6
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 1.5e-24 116.7 104 62.5
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 1.0e-23 114.0 95 62.1
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 1.0e-23 114.0 142 53.5
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 4.9e-23 111.7 96 64.6
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 8.4e-23 110.9 83 69.9
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 1.9e-22 109.8 83 69.9
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.6e-21 105.1 120 57.5
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 7.4e-19 97.8 65 78.5
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 9.0e-17 90.9 82 58.5
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 3.2e-14 82.4 111 46.8
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 7.2e-14 81.3 87 55.2
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 2.7e-13 79.3 112 48.2
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.3e-12 76.3 87 52.9
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 9.1e-09 64.3 60 60.0


User provided reference genes

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