Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 2257.6 1129 100.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1964.1 1097 88.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1947.2 1077 89.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1926.4 1114 85.6
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1921.0 1063 88.9
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1921.0 1063 88.9
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1761.9 1058 81.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1756.9 1043 83.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1755.0 1060 81.7
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1733.0 1057 80.2
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1555.8 929 82.2
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1553.9 1045 73.5
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1539.2 1045 73.2
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1433.3 1107 64.6
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1417.1 1109 64.2
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1415.2 1129 62.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1328.2 1092 61.4
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1306.2 1104 60.3
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1302.0 1076 61.0
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1299.6 1107 60.4
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1294.6 1117 59.8
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1281.9 1081 60.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1280.0 1058 61.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1277.7 1098 59.0
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1262.3 1094 57.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1254.2 1118 56.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1253.4 1112 58.7
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1249.6 1107 58.9
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1232.6 1093 58.6
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1226.8 1100 57.2
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1226.1 1134 56.7
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1222.6 1040 57.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1218.8 1062 58.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1218.8 1046 57.2
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1208.4 1103 56.8
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1207.2 753 79.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1203.3 1089 57.5
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1202.6 1125 55.6
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1192.6 1076 56.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1190.3 996 59.9
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1177.2 1093 54.6
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1177.2 1037 58.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1172.5 1067 56.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1169.8 1049 56.2
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1166.0 1126 53.4
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1160.6 1052 56.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1154.0 1102 54.0
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1149.4 1023 56.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1145.2 1112 53.4
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1142.1 1199 50.8
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1140.2 1100 53.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 1162 51.1
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1129.8 1123 52.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1038 54.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1120.1 1114 52.7
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1119.4 1147 51.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1118.2 1121 52.2
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1118.2 1121 52.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1117.1 1131 51.9
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1115.1 1028 54.3
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1108.2 1042 53.7
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1107.8 982 56.0
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1105.1 1105 52.6
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1100.1 1082 51.5
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1087.8 1132 49.6
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1081.6 1106 51.3
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1075.1 933 56.8
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.5e-311 1072.8 1056 52.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.1e-308 1063.5 873 61.5
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 8.2e-304 1047.3 1033 52.0
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.6e-302 1042.3 1101 50.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 6.5e-301 1037.7 1049 50.5
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.3e-298 1030.0 978 51.9
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 9.7e-297 1023.8 898 56.9
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.4e-292 1010.0 916 55.3
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.5e-292 1009.2 770 64.2
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.6e-291 1005.0 1024 49.7
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 4.4e-289 998.4 836 61.1
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 2.8e-280 969.1 1153 45.6
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 8.2e-280 967.6 876 58.0
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.6e-273 946.0 919 54.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 4.7e-267 925.2 1079 45.3
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 8.0e-267 924.5 1088 45.6
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.0e-258 897.5 1070 46.4
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.0e-249 866.7 1077 46.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.4e-242 844.0 936 48.1
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.2e-240 836.6 694 60.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 4.6e-230 802.4 732 56.1
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.0e-229 801.2 992 43.1
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 2.3e-221 773.5 737 52.9
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 3.6e-219 766.1 637 59.0
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.1e-218 764.6 1083 40.3
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-214 750.4 552 65.9
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.9e-205 719.5 641 55.5
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 5.5e-191 672.5 1069 37.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.7e-171 606.7 645 49.5
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.9e-159 567.8 487 58.5
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.5e-156 558.1 603 46.8
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.7e-129 467.6 370 61.4
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 7.5e-124 449.5 364 61.8
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-109 401.4 383 52.0
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 9.0e-101 372.9 208 85.6
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.0e-96 359.4 352 51.7
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.0e-83 316.2 192 79.2
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.4e-82 312.4 218 67.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.6e-81 308.9 1020 26.4
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-76 292.4 220 62.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.3e-71 274.6 223 58.7
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.6e-65 254.2 333 42.3
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 2.6e-60 238.4 258 46.1
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.2e-54 218.8 179 60.9
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.0e-53 213.8 179 59.2
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-51 209.9 179 58.7
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.5e-50 205.3 174 57.5
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.6e-49 201.4 348 34.5
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.0e-49 200.3 909 24.2
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 7.0e-45 187.2 135 68.1
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-42 179.1 130 66.2
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 6.8e-40 170.6 199 41.2
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.7e-36 158.7 115 60.0
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.3e-35 156.4 130 55.4
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.5e-34 152.9 84 86.9
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.5e-34 151.0 131 54.2
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 7.2e-34 150.6 126 59.5
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.8e-32 146.0 154 46.1
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-31 143.3 1022 22.3
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.5e-31 142.9 302 35.4
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.6e-28 132.9 533 22.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.6e-25 122.9 133 46.6
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.8e-24 119.4 106 56.6
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.0e-24 118.2 416 23.8
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.6e-20 104.8 93 52.7
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 3.9e-19 101.7 82 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.0e-16 93.6 1019 19.7
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.0e-15 89.4 378 24.6
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.4e-15 88.2 548 22.6
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 9.8e-15 87.0 95 43.2
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.4e-14 84.3 268 24.6
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.2e-12 80.1 58 60.3
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.2e-12 80.1 379 24.5
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.5e-12 78.6 58 58.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.6e-12 78.2 254 25.6
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.3e-10 71.6 100 40.0
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.2e-09 70.1 66 53.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 4.9e-06 58.2 82 41.5
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.4e-06 57.8 74 44.6


User provided reference genes

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