Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.2e-183 646.4 324 100.0
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.1e-163 580.1 322 87.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 9.0e-163 577.0 322 87.3
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.6e-159 564.7 322 86.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.2e-156 554.3 322 83.9
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 4.2e-152 541.6 323 79.3
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.5e-152 541.2 322 82.0
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 4.6e-151 538.1 323 78.6
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.3e-150 536.6 322 80.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 5.6e-149 531.2 318 80.5
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.7e-145 519.6 325 79.4
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.9e-145 518.1 321 79.8
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-142 509.6 308 77.6
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 9.0e-139 497.3 322 74.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.7e-138 494.2 324 75.3
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.7e-137 493.0 322 73.9
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.7e-137 493.0 322 73.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.2e-137 492.7 324 73.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 5.0e-137 491.5 324 72.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 5.0e-137 491.5 321 72.9
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.5e-136 489.2 324 74.1
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.2e-136 488.8 323 72.1
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 9.4e-136 487.3 322 72.7
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.2e-135 486.9 324 72.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.6e-135 486.5 322 72.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 2.1e-135 486.1 320 73.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.6e-135 485.3 324 72.5
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 4.6e-135 485.0 321 71.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 4.6e-135 485.0 324 72.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 6.1e-135 484.6 319 73.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 6.1e-135 484.6 322 71.1
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 7.9e-135 484.2 325 72.3
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.9e-135 484.2 325 72.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.4e-134 483.4 321 72.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.3e-134 482.6 325 69.8
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.3e-134 482.6 322 73.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.8e-134 480.7 321 71.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.0e-133 479.6 326 71.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.5e-133 479.2 325 71.7
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 7.4e-133 477.6 321 70.4
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 9.7e-133 477.2 324 71.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-132 476.1 322 70.2
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-132 475.7 321 70.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 3.7e-132 475.3 332 71.1
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.3e-132 474.6 324 72.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.4e-131 472.6 322 71.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.4e-131 472.6 322 72.7
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 6.9e-131 471.1 323 70.6
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.4e-130 468.8 322 71.1
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.9e-130 468.0 326 70.9
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.7e-129 466.5 326 69.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.1e-128 463.8 323 70.6
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.9e-128 463.0 324 69.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.5e-128 462.6 322 68.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 3.2e-128 462.2 322 68.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.2e-128 462.2 326 68.1
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 4.2e-128 461.8 326 68.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.2e-127 460.3 323 68.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.1e-127 459.5 322 69.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 2.7e-127 459.1 317 69.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.7e-127 459.1 318 69.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 2.7e-127 459.1 324 68.2
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.1e-127 458.0 327 68.8
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.1e-127 458.0 326 68.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.9e-126 455.3 323 67.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.9e-126 455.3 323 67.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.7e-126 454.5 325 68.9
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-125 453.4 321 67.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 5.7e-125 451.4 325 68.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.2e-124 449.5 369 61.2
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.8e-124 449.1 320 67.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.2e-124 447.6 321 66.7
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.2e-124 447.6 326 68.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.4e-123 446.0 325 67.1
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 9.1e-123 444.1 325 66.2
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 9.1e-123 444.1 319 67.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.2e-122 443.7 322 66.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 2.6e-122 442.6 325 66.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.6e-122 442.6 328 65.9
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 66.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.7e-121 439.9 321 65.1
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.7e-121 439.9 323 66.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.8e-121 438.7 323 65.6
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.8e-121 438.7 325 65.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.8e-121 438.7 325 65.5
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-120 435.6 323 67.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 64.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.2e-119 433.7 325 65.2
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.6e-119 433.3 322 65.8
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.1e-119 433.0 323 66.6
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 6.1e-119 431.4 325 65.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.0e-118 430.6 321 64.8
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 6.7e-118 427.9 324 64.2
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.4e-117 425.2 324 64.2
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-116 423.7 324 63.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.7e-116 423.3 323 63.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 4.8e-116 421.8 305 66.6
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 4.8e-116 421.8 318 66.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-115 419.9 288 71.2
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.8e-115 419.9 325 63.7
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.2e-114 417.2 320 65.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.6e-114 416.8 327 63.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.2e-111 407.1 264 75.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.1e-111 406.4 303 64.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.7e-111 406.0 281 70.1
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.0e-109 399.8 323 62.2
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 7.5e-109 397.9 221 86.4
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-107 392.9 324 60.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 4.1e-107 392.1 415 52.8
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.2e-106 390.6 294 65.6
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.7e-106 389.4 375 56.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.8e-105 385.6 322 62.1
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.5e-105 384.8 324 59.9
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-104 384.0 288 65.3
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.7e-103 379.4 286 65.4
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.1e-103 378.3 322 60.9
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 8.8e-102 374.4 253 72.3
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.7e-100 369.0 541 41.6
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-99 367.5 321 57.6
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.4e-91 338.6 323 56.7
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.2e-91 337.8 265 62.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.0e-89 332.0 683 34.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 3.1e-86 322.8 310 52.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.9e-83 313.5 230 67.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.0e-82 308.5 310 49.4
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 6.0e-82 308.5 256 61.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.0e-81 305.4 310 49.4
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 3.6e-79 299.3 305 50.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.1e-75 285.0 202 68.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 9.9e-69 264.6 177 74.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 4.9e-68 262.3 221 59.3
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 8.4e-52 208.4 299 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 5.8e-45 185.7 187 46.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.4e-35 154.5 96 79.2
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 7.9e-34 148.7 99 72.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 4.1e-30 136.3 99 70.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.0e-28 131.7 93 64.5
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 1.0e-28 131.7 119 62.2
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.3e-28 131.3 93 64.5
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 7.9e-26 122.1 335 28.1
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.8e-25 120.9 74 70.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.1e-25 119.4 86 64.0
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 5.0e-20 102.8 88 60.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.1e-18 95.9 81 56.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.1e-14 83.6 66 62.1
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-09 67.4 43 72.1
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.3e-08 63.5 54 59.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.3e-08 63.5 54 59.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 4.4e-08 63.2 54 59.3
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 5.7e-08 62.8 43 67.4
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 5.7e-08 62.8 55 54.5
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 8.2e-07 58.9 70 47.1


User provided reference genes

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