Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.5e-103 377.9 182 100.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.5e-87 324.7 186 86.0
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.9e-86 322.0 187 85.6
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.5e-85 319.7 186 81.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.9e-85 319.3 186 80.6
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.0e-82 309.3 186 81.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.4e-82 308.1 180 81.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-81 306.6 186 78.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.7e-81 305.1 186 78.5
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.3e-80 301.2 185 76.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 3.5e-79 298.5 186 77.4
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.9e-78 295.4 181 76.8
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 5.0e-78 294.7 183 75.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 6.5e-78 294.3 186 77.4
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.1e-77 293.5 187 74.9
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.5e-77 292.4 187 74.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 9.4e-77 290.4 181 75.1
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.6e-76 289.7 168 79.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.8e-75 286.2 186 73.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.3e-75 285.8 183 77.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.0e-75 285.4 181 74.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 5.2e-75 284.6 181 74.0
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 8.8e-75 283.9 188 73.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 9.8e-74 280.4 184 72.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 9.8e-74 280.4 176 75.0
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.8e-73 278.9 181 72.4
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.3e-73 277.7 186 71.5
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.3e-73 277.3 183 72.1
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 8.3e-73 277.3 180 72.8
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.1e-72 276.9 184 71.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.1e-72 276.9 181 71.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.4e-72 276.6 182 72.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 4.1e-72 275.0 183 71.6
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.4e-72 274.6 181 70.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 7.0e-72 274.2 181 74.0
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.0e-72 274.2 184 70.1
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 9.1e-72 273.9 182 70.9
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.2e-71 273.5 180 72.2
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.6e-71 273.1 181 70.7
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.6e-71 273.1 178 71.9
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.0e-71 272.7 181 72.4
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.7e-71 272.3 184 70.1
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.7e-71 272.3 184 70.7
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.7e-71 272.3 183 68.9
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.7e-71 272.3 182 70.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.7e-71 272.3 181 72.4
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.5e-71 271.9 178 71.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.5e-71 271.9 186 69.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 4.5e-71 271.6 183 70.5
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.0e-70 270.4 182 70.9
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-70 270.4 182 70.9
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 5.0e-70 268.1 183 70.5
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 5.0e-70 268.1 188 69.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.5e-69 265.8 181 70.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.2e-69 265.4 182 69.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.2e-69 265.0 184 69.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.5e-69 264.6 183 68.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 9.4e-69 263.8 186 71.0
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.2e-68 263.5 183 67.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.7e-68 262.3 195 65.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.7e-68 261.5 174 69.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 8.0e-68 260.8 181 71.3
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.0e-67 260.4 165 74.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.3e-67 259.2 186 65.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.8e-67 257.7 180 65.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 6.8e-67 257.7 185 66.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 8.8e-67 257.3 180 65.0
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 9.8e-66 253.8 180 66.7
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.7e-65 251.9 178 66.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 6.3e-65 251.1 163 72.4
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 8.3e-65 250.8 170 68.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.8e-64 249.6 179 66.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.8e-64 249.6 160 71.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.1e-64 248.4 192 60.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.1e-64 248.4 195 64.1
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.0e-64 247.7 181 64.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 9.2e-64 247.3 181 65.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.2e-63 246.9 159 73.0
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.5e-63 245.0 176 65.3
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.0e-62 243.8 178 64.6
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.0e-62 243.8 181 65.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.0e-62 243.8 187 62.6
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-62 242.7 183 63.9
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.8e-62 241.9 172 64.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.6e-62 241.1 177 64.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.9e-61 239.6 199 60.3
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.5e-61 239.2 165 66.1
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.2e-60 236.9 184 62.5
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.2e-60 236.9 184 62.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.2e-60 236.9 130 85.4
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.8e-60 235.7 180 60.6
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.6e-60 235.3 180 63.9
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.7e-60 235.0 179 63.7
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 6.1e-60 234.6 165 67.3
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 6.1e-60 234.6 180 64.4
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.4e-59 233.4 177 59.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.0e-59 232.3 183 61.2
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.0e-59 232.3 183 61.2
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.6e-58 229.2 181 59.7
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 7.5e-58 227.6 184 56.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.7e-57 226.5 166 69.3
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 8.3e-57 224.2 182 58.8
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 8.3e-57 224.2 191 55.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.7e-55 219.2 150 67.3
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.8e-55 217.6 180 56.7
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.3e-54 216.1 179 62.6
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 3.0e-54 215.7 160 61.9
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 5.0e-54 214.9 136 76.5
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.5e-53 213.4 163 63.8
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.2e-52 210.3 178 55.6
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.2e-52 210.3 133 75.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.5e-50 203.4 133 72.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.9e-48 196.4 164 59.8
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.9e-48 196.4 189 51.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.6e-47 191.8 143 66.4
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-46 189.5 169 50.9
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.0e-46 188.3 169 50.9
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-44 183.3 165 51.5
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-43 180.6 186 54.8
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-43 179.9 152 55.3
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.5e-42 176.8 112 72.3
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.4e-42 175.3 189 49.2
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-40 169.1 158 48.7
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.1e-40 168.7 139 54.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.5e-37 157.5 128 55.5
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.1e-35 154.1 107 66.4
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.4e-35 153.7 176 46.6
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.6e-34 149.4 181 44.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.3e-33 147.1 178 42.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-32 143.7 169 43.8
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.7e-31 139.4 98 62.2
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.7e-28 128.6 88 69.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 7.1e-24 114.8 182 37.4
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.2e-20 101.7 117 47.9
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.7e-17 93.6 49 91.8
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-17 92.0 87 46.0
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.4e-16 89.7 49 85.7
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 6.2e-12 75.1 49 69.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 6.9e-11 71.6 49 63.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.3e-09 67.4 48 66.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.7e-09 67.0 105 37.1
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-07 60.5 53 52.8
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 3.9e-06 55.8 46 58.7


User provided reference genes

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