Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.5e-229 799.3 438 100.0
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 4.6e-186 654.8 437 86.3
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.4e-182 642.5 434 84.8
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 7.1e-171 604.4 431 79.6
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 4.8e-167 591.7 445 78.2
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.7e-164 583.2 434 76.7
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 5.1e-161 571.6 435 75.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 6.2e-159 564.7 401 79.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 4.0e-158 562.0 433 75.1
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 3.8e-156 555.4 437 75.7
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.9e-147 526.6 434 71.4
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.3e-132 477.2 440 65.9
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 8.8e-129 464.5 438 64.4
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.5e-128 463.8 434 64.3
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.6e-128 463.0 435 65.3
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.6e-128 463.0 434 64.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 8.2e-127 458.0 470 60.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 4.1e-126 455.7 464 62.9
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 5.3e-126 455.3 452 63.7
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 5.3e-126 455.3 465 61.7
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.5e-125 453.8 439 63.8
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 5.9e-125 451.8 462 60.8
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.9e-124 449.5 462 59.7
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.8e-124 449.1 431 64.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.9e-123 446.8 439 62.9
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.2e-123 446.0 458 60.3
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 9.4e-123 444.5 462 60.8
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.0e-122 441.4 459 59.9
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 8.0e-122 441.4 463 59.6
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 4.8e-119 432.2 461 60.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.5e-117 426.0 431 60.1
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.5e-116 421.8 477 58.1
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.5e-115 420.6 441 61.9
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.9e-115 420.2 460 58.7
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 2.5e-115 419.9 456 59.9
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 3.6e-114 416.0 442 60.9
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.8e-113 413.7 464 57.5
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.3e-111 407.5 437 57.9
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 6.3e-111 405.2 435 60.2
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.1e-110 404.4 431 59.6
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 5.3e-110 402.1 469 56.5
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.9e-108 396.4 434 60.1
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 8.5e-108 394.8 343 69.4
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 8.5e-108 394.8 464 56.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 5.5e-107 392.1 443 57.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 9.4e-107 391.3 448 57.4
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.8e-105 387.1 431 58.5
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 3.0e-105 386.3 438 56.4
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 5.2e-105 385.6 438 56.4
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.2e-104 384.4 427 58.5
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 5.7e-104 382.1 436 57.3
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 7.5e-104 381.7 438 56.2
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 7.5e-104 381.7 438 56.2
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 9.8e-104 381.3 430 57.9
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.3e-103 380.9 481 54.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.8e-103 379.8 499 50.9
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.8e-103 379.0 453 56.5
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.4e-102 376.7 435 57.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.1e-102 375.9 434 56.0
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 5.4e-102 375.6 433 56.4
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 3.5e-101 372.9 433 56.1
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.5e-101 372.9 454 55.7
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 2.9e-100 369.8 431 55.7
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 5.0e-100 369.0 452 54.9
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 2.5e-99 366.7 426 54.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.2e-99 365.9 363 62.5
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.2e-98 364.4 445 54.6
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.5e-96 357.5 432 53.7
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 7.5e-96 355.1 272 74.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-95 354.4 426 55.2
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.7e-95 354.0 318 65.1
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.8e-95 353.2 444 53.8
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 3.7e-95 352.8 424 55.2
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 4.9e-95 352.4 425 52.5
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 6.3e-95 352.1 650 43.1
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 3.2e-94 349.7 434 55.5
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.5e-93 346.3 441 53.7
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 3.5e-93 346.3 427 53.9
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.9e-92 342.8 428 52.3
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 5.0e-92 342.4 458 51.7
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.1e-90 337.0 423 53.0
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.8e-90 336.7 419 53.7
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.8e-89 334.0 281 66.9
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.4e-87 325.5 506 47.2
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.2e-86 323.2 448 47.5
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 4.1e-86 322.8 465 51.8
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.2e-85 321.2 473 49.5
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.0e-84 318.2 461 50.3
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 5.0e-84 315.8 434 52.1
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.6e-82 309.7 430 50.2
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.2e-80 304.7 427 50.6
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.4e-79 298.9 442 47.5
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.1e-78 298.1 429 46.4
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 5.4e-78 295.8 449 48.1
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.7e-76 290.8 465 47.3
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.1e-73 281.6 458 46.1
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 8.9e-73 278.5 437 47.1
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 5.4e-70 269.2 437 44.2
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.3e-68 264.6 442 47.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.3e-68 263.8 301 57.1
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.3e-68 263.8 259 63.7
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.1e-68 262.7 431 46.2
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 5.1e-68 262.7 335 49.6
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.4e-62 242.7 350 47.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 9.3e-62 241.9 228 64.5
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.9e-54 217.6 251 49.8
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 7.9e-53 212.2 280 53.2
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 2.6e-48 197.2 266 45.1
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.2e-45 188.3 421 36.6
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.8e-44 184.5 470 36.2
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.0e-41 173.3 471 36.5
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.0e-36 158.7 364 33.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 6.5e-31 139.4 169 57.4
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.0e-28 130.6 254 42.1
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 3.8e-23 113.6 164 51.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.9e-22 111.3 104 64.4
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.9e-22 111.3 104 64.4
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 6.1e-21 106.3 87 72.4
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.4e-20 105.1 355 31.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.4e-17 95.1 90 61.1
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.4e-17 95.1 90 61.1
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 3.4e-16 90.5 149 47.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.2e-15 87.8 158 46.8
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.9e-14 84.7 319 30.4
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.3e-12 77.8 88 51.1
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 6.7e-12 76.3 50 82.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.8e-10 70.9 65 56.9
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 8.2e-10 69.3 237 29.5
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.9e-08 63.2 118 36.4
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 9.4e-06 55.8 193 32.1


User provided reference genes

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