Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 6.1e-106 387.5 195 100.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 4.1e-86 321.6 195 83.1
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 8.6e-76 287.3 194 76.3
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 3.6e-74 282.0 189 75.7
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 3.0e-73 278.9 189 75.1
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 8.8e-73 277.3 194 72.7
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-70 270.4 196 73.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-70 270.4 196 73.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-70 270.4 196 73.0
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 2.7e-69 265.8 163 79.8
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 1.0e-65 253.8 194 67.5
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.1e-62 243.8 185 67.0
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 6.8e-57 224.6 158 68.4
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 2.0e-56 223.0 158 67.7
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 3.4e-56 222.2 198 59.6
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.4e-54 216.9 146 71.2
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 4.6e-53 211.8 160 67.5
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 4.6e-53 211.8 193 59.1
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.6e-53 211.8 193 59.1
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.0e-52 210.7 190 60.0
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 3.0e-52 209.1 189 57.7
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 8.6e-52 207.6 199 56.8
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.1e-51 207.2 159 67.3
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 4.3e-51 205.3 153 64.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.2e-50 203.8 193 59.1
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.1e-50 203.0 198 55.6
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.2e-50 201.4 158 60.8
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 6.2e-50 201.4 193 58.0
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 6.2e-50 201.4 199 56.8
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 8.1e-50 201.1 193 57.5
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.3e-49 199.5 199 57.3
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 4.0e-49 198.7 148 68.2
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 4.0e-49 198.7 199 54.3
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 1.5e-48 196.8 188 54.3
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 5.8e-48 194.9 151 65.6
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 5.8e-48 194.9 193 57.5
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.7e-47 193.4 188 57.4
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 4.9e-47 191.8 194 55.2
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 6.4e-47 191.4 193 56.0
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 8.3e-47 191.0 157 63.1
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.1e-46 190.7 155 62.6
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.1e-46 190.7 189 56.1
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.9e-46 189.9 191 53.9
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 2.4e-46 189.5 193 52.3
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 4.1e-46 188.7 148 64.9
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 9.2e-46 187.6 144 64.6
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.2e-45 187.2 147 65.3
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.2e-45 187.2 193 54.4
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.3e-44 183.7 156 60.3
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 5.1e-44 181.8 190 49.5
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.5e-43 179.5 159 59.7
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 3.3e-43 179.1 189 52.9
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.2e-42 177.2 175 52.6
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 2.1e-42 176.4 158 55.7
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.8e-42 176.0 107 73.8
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.7e-42 175.3 100 82.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.1e-42 174.5 132 67.4
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 8.1e-42 174.5 186 50.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 2.4e-41 172.9 192 50.0
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.1e-41 172.6 132 65.9
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 3.1e-41 172.6 192 50.5
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 4.0e-41 172.2 97 80.4
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 8.9e-41 171.0 172 53.5
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 2.0e-40 169.9 192 51.0
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.6e-40 169.5 167 55.1
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 4.4e-40 168.7 171 51.5
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 7.6e-40 167.9 190 52.6
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 7.6e-40 167.9 107 69.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 9.9e-40 167.5 150 54.7
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.3e-39 167.2 164 55.5
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.9e-39 166.0 120 65.0
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 3.8e-39 165.6 191 50.8
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 4.9e-39 165.2 169 50.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 6.4e-39 164.9 188 49.5
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.4e-39 164.5 190 48.4
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.1e-38 164.1 110 70.0
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.1e-38 164.1 130 62.3
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.4e-38 162.9 192 48.4
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.4e-38 161.8 158 52.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 5.4e-38 161.8 128 61.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 7.1e-38 161.4 115 67.0
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.2e-37 160.6 109 65.1
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.6e-37 160.2 190 46.3
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 7.8e-37 157.9 188 47.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 7.8e-37 157.9 118 62.7
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 2.3e-36 156.4 128 63.3
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.3e-36 156.4 84 85.7
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 3.9e-36 155.6 194 45.4
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 6.6e-36 154.8 127 58.3
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.5e-35 153.7 193 47.2
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 2.5e-35 152.9 193 47.7
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 2.5e-35 152.9 139 53.2
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.3e-35 152.5 193 46.6
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 5.6e-35 151.8 166 48.8
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 9.6e-35 151.0 201 44.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 9.6e-35 151.0 191 45.5
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.2e-34 150.6 115 61.7
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.2e-34 150.6 201 44.8
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.2e-34 150.6 128 56.2
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.2e-34 150.6 126 61.9
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.6e-34 150.2 199 44.7
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.6e-34 150.2 115 62.6
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 8.1e-34 147.9 173 50.3
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.1e-33 147.5 146 51.4
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.1e-33 147.5 99 67.7
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-33 147.5 99 67.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-33 147.5 99 67.7
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.8e-33 146.7 199 43.7
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.8e-33 146.7 199 43.7
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.1e-33 146.0 99 66.7
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 99 65.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 99 65.7
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 2.1e-29 133.3 75 74.7
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 3.5e-29 132.5 95 63.2
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 8.7e-28 127.9 100 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.5e-27 127.1 168 39.9
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 6.9e-25 118.2 136 44.9
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 9.0e-25 117.9 118 48.3
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 9.9e-24 114.4 88 58.0
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.9e-23 112.1 114 50.0
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.4e-22 109.8 95 55.8
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.6e-21 107.1 72 66.7
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.3e-20 104.0 133 42.9
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 9.6e-19 97.8 124 41.9
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 4.8e-18 95.5 112 43.8
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-16 90.5 114 44.7
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.1e-14 84.3 79 51.9
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.6e-13 80.5 72 48.6
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 6.0e-13 78.6 87 49.4
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.9e-13 78.2 79 50.6
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-12 76.6 90 44.4
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 2.5e-11 73.2 49 69.4
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 5.6e-11 72.0 70 42.9
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 6.9e-09 65.1 72 41.7
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.4e-08 62.8 82 43.9
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 7.6e-08 61.6 196 24.5
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 5.5e-06 55.5 59 40.7


User provided reference genes

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