Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.6e-64 249.2 120 100.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.6e-62 240.7 120 96.7
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 4.0e-60 234.6 120 92.5
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 1.3e-58 229.6 120 90.0
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 1.4e-57 226.1 118 89.0
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.4e-57 226.1 119 88.2
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 2.5e-57 225.3 120 85.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.2e-57 224.9 120 85.8
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 3.2e-57 224.9 118 88.1
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 4.2e-57 224.6 120 85.8
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 86.7
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 9.3e-57 223.4 118 89.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 9.3e-57 223.4 119 86.6
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 85.0
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.0
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 84.2
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.8
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 3.5e-56 221.5 120 83.3
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.0
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.0
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.0e-55 219.9 120 85.0
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 83.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 84.2
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 82.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 84.2
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 83.3
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 3.9e-55 218.0 118 85.6
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 84.2
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 5.1e-55 217.6 119 84.0
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 85.0
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 85.0
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 80.8
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 82.5
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 85.0
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 8.7e-55 216.9 118 83.1
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 83.3
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.1e-54 216.5 119 84.9
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 1.1e-54 216.5 119 83.2
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 82.5
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 119 80.7
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 81.7
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 82.5
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 83.3
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 81.7
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.6e-53 212.6 118 83.1
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 81.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 81.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 81.7
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 3.7e-53 211.5 118 83.1
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 81.7
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 80.8
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.8
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.0
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 5.3e-52 207.6 118 80.5
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.0
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 6.9e-52 207.2 120 80.0
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 6.9e-52 207.2 120 80.0
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.0
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.0
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.0
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 80.0
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.0e-51 205.7 118 78.0
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.0e-51 205.7 111 85.6
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 2.0e-51 205.7 119 77.3
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.0
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 2.0e-51 205.7 118 80.5
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.6e-51 205.3 117 78.6
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 7.7e-51 203.8 144 70.1
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 79.2
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 79.2
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 78.3
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 1.7e-50 202.6 118 78.8
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 76.7
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.2e-50 202.2 118 81.4
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.8e-50 201.4 110 83.6
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 119 78.2
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 8.5e-50 200.3 118 78.8
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 77.1
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 1.1e-49 199.9 111 83.8
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.4e-49 199.5 120 75.8
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 77.5
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 3.2e-49 198.4 118 79.7
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 4.2e-49 198.0 118 78.8
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 4.2e-49 198.0 118 78.0
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 78.0
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 78.0
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 78.8
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 7.2e-49 197.2 119 76.5
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 7.2e-49 197.2 119 76.5
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 9.4e-49 196.8 118 78.0
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 9.4e-49 196.8 118 78.0
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.2e-48 196.4 118 79.7
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.7e-48 195.3 118 77.1
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.1e-48 194.1 115 80.9
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 6.1e-48 194.1 119 75.6
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 7.9e-48 193.7 118 77.1
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.4e-47 193.0 110 79.1
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.8e-47 192.6 110 82.7
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 3.0e-47 191.8 118 78.8
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 3.9e-47 191.4 112 82.1
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 3.9e-47 191.4 118 75.4
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 3.9e-47 191.4 118 75.4
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.5e-46 189.5 118 75.4
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 5.7e-46 187.6 118 74.6
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 7.4e-46 187.2 111 75.7
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.7e-45 186.0 120 72.5
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.4e-44 182.2 107 82.2
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 6.5e-42 174.1 131 66.4
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 8.5e-42 173.7 110 74.5
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 1.1e-41 173.3 124 71.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 7.2e-41 170.6 95 83.2
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 4.7e-40 167.9 211 45.5
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.7e-40 167.9 95 81.1
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 1.4e-39 166.4 91 83.5
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 3.9e-39 164.9 93 81.7
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 2.0e-38 162.5 120 63.3
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 2.0e-38 162.5 118 61.0
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 2.6e-38 162.2 110 73.6
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 2.6e-38 162.2 110 73.6
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 1.7e-37 159.5 136 64.7
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.7e-37 159.5 93 78.5
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.2e-37 159.1 110 72.7
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-37 159.1 91 79.1
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-37 157.5 91 79.1
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.1e-36 156.8 86 81.4
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.0e-36 154.1 91 78.0
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.2e-35 153.3 89 78.7
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.0e-35 152.5 91 75.8
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 2.0e-35 152.5 94 76.6
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 1.3e-34 149.8 169 48.5
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.7e-34 149.4 133 54.1
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 57.5
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 8.5e-34 147.1 92 75.0
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 1.9e-33 146.0 89 77.5
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 3.2e-33 145.2 118 62.7
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 9.4e-33 143.7 89 76.4
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 4.7e-32 141.4 83 77.1
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.0e-30 136.0 89 73.0
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.6e-30 135.6 77 80.5
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 2.4e-28 129.0 86 70.9
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.2e-27 126.7 62 93.5
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 4.5e-27 124.8 91 68.1
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 1.7e-26 122.9 62 88.7
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 3.8e-26 121.7 62 88.7
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.9e-25 119.4 118 47.5
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 2.5e-25 119.0 62 87.1
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 8.0e-24 114.0 95 62.1
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-20 102.4 120 47.5
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.3e-18 96.7 108 41.7
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 2.2e-18 95.9 57 75.4
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 9.4e-17 90.5 115 39.1
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 1.2e-16 90.1 82 58.5
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.1e-16 89.4 68 61.8
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.0e-15 87.0 68 60.3
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.7e-13 78.6 53 67.9
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 4.8e-13 78.2 44 79.5
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 77.1
arahy.Tifrunner.gnm1.ann1.HIJ85I Arachis hypogaea HOM05D004197 ORTHO05D087148 9.8e-06 53.9 29 89.7


User provided reference genes

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