Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 6.4e-174 614.0 313 100.0
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 3.6e-161 571.6 312 93.6
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 4.8e-161 571.2 313 92.7
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 5.8e-159 564.3 313 91.7
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 1.8e-152 542.7 313 88.5
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 1.8e-152 542.7 313 88.5
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 6.9e-152 540.8 313 87.2
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 2.4e-149 532.3 313 85.3
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 1.5e-146 523.1 313 84.0
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 5.6e-146 521.2 304 87.5
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 2.8e-145 518.8 313 83.7
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 3.7e-145 518.5 312 83.0
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 4.8e-145 518.1 304 85.5
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 6.2e-145 517.7 311 85.5
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 6.2e-145 517.7 311 85.5
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 6.2e-145 517.7 311 83.0
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 1.1e-144 516.9 312 83.0
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 3.1e-144 515.4 312 84.6
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 5.3e-144 514.6 311 84.2
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 5.3e-144 514.6 311 84.9
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 5.3e-144 514.6 313 84.7
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 9.0e-144 513.8 312 82.4
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 1.2e-143 513.5 303 85.1
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 2.6e-143 512.3 304 84.5
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 2.6e-143 512.3 311 82.3
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 3.4e-143 511.9 312 82.7
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 3.4e-143 511.9 312 82.1
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 4.5e-143 511.5 304 84.2
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 7.6e-143 510.8 311 82.0
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 1.0e-142 510.4 311 83.0
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 2.2e-142 509.2 306 85.0
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 6.5e-142 507.7 306 83.7
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 8.4e-142 507.3 311 82.3
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 8.4e-142 507.3 311 82.3
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 1.9e-141 506.1 311 82.3
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 1.9e-141 506.1 311 81.0
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 2.5e-141 505.8 295 85.4
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 2.5e-141 505.8 311 82.0
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 3.2e-141 505.4 311 83.3
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 4.2e-141 505.0 311 81.0
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 7.1e-141 504.2 311 82.0
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 1.6e-140 503.1 325 79.4
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 2.1e-140 502.7 311 81.7
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.1e-140 502.7 311 81.4
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 7.9e-140 500.7 306 82.7
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 7.9e-140 500.7 311 80.7
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 7.9e-140 500.7 314 80.6
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 1.0e-139 500.4 311 80.7
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 1.0e-139 500.4 315 80.6
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 1.8e-139 499.6 311 79.7
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 3.0e-139 498.8 311 81.0
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 5.1e-139 498.0 311 79.7
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 6.7e-139 497.7 294 85.7
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 8.7e-139 497.3 312 81.1
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 1.9e-138 496.1 311 78.8
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 4.3e-138 495.0 300 82.7
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 9.7e-138 493.8 298 82.6
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 1.3e-137 493.4 311 78.1
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 2.4e-136 489.2 303 81.2
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 2.0e-135 486.1 311 77.5
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 5.0e-134 481.5 301 79.1
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 2.7e-132 475.7 311 77.2
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 3.6e-132 475.3 301 79.4
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 3.6e-132 475.3 306 78.8
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 3.6e-132 475.3 311 76.8
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 4.6e-132 474.9 304 78.3
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 7.9e-132 474.2 304 78.3
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 3.0e-131 472.2 304 78.6
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 8.8e-131 470.7 311 76.5
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 1.1e-130 470.3 310 77.7
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 1.9e-130 469.5 293 80.2
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 7.4e-130 467.6 304 77.3
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 7.4e-130 467.6 304 77.3
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 1.3e-129 466.8 302 77.2
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 1.7e-129 466.5 306 77.8
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 3.7e-129 465.3 312 75.6
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 3.7e-129 465.3 304 77.6
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 6.3e-129 464.5 312 75.3
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 8.2e-129 464.2 312 75.6
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 8.2e-129 464.2 312 75.6
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 8.2e-129 464.2 290 81.4
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 1.1e-128 463.8 311 75.9
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 1.4e-128 463.4 311 75.6
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 1.4e-128 463.4 297 77.4
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 1.8e-128 463.0 303 76.9
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 2.4e-128 462.6 309 76.4
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 4.1e-128 461.8 312 75.3
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 6.9e-128 461.1 314 75.5
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 2.0e-127 459.5 312 75.3
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 2.0e-127 459.5 312 75.3
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 2.0e-127 459.5 314 73.6
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 3.4e-127 458.8 302 77.2
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 4.5e-127 458.4 290 79.0
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 7.7e-127 457.6 310 75.8
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 1.0e-126 457.2 312 75.0
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 1.0e-126 457.2 295 76.3
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 1.0e-126 457.2 311 75.6
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 2.2e-126 456.1 310 74.2
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 5.0e-126 454.9 299 75.9
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.1e-125 453.8 315 75.6
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 3.2e-125 452.2 312 74.4
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 5.5e-125 451.4 303 76.6
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 1.2e-124 450.3 312 73.7
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 2.7e-124 449.1 311 73.6
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.7e-124 449.1 281 78.6
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 1.8e-123 446.4 310 73.2
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 3.9e-123 445.3 313 72.5
unitig_744.g24076 Utricularia gibba HOM05D005369 ORTHO05D006955 2.8e-121 439.1 293 75.8
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 4.8e-121 438.3 300 74.0
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 1.4e-120 436.8 295 74.9
BcaB03g12082 Brassica carinata HOM05D005369 ORTHO05D006955 2.4e-120 436.0 312 72.4
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 1.2e-116 423.7 310 70.6
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 6.1e-116 421.4 280 75.7
Migut.L01099 Erythranthe guttata HOM05D005369 ORTHO05D006955 8.2e-113 411.0 308 70.1
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 3.8e-110 402.1 229 85.6
Mapoly0084s0019 Marchantia polymorpha HOM05D005369 ORTHO05D006955 1.3e-105 387.1 305 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2009 Anthoceros agrestis HOM05D005369 ORTHO05D006955 2.8e-105 386.0 307 63.5
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 1.6e-103 380.2 210 88.1
SMO353G0425 Selaginella moellendorffii HOM05D005369 ORTHO05D006955 5.0e-102 375.2 297 65.0
Pp3c18_5500 Physcomitrium patens HOM05D005369 ORTHO05D006955 8.0e-100 367.9 300 62.7
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 3.4e-98 362.5 311 62.4
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 1.0e-94 350.9 292 64.0
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.9e-89 332.0 193 80.3
CBR_g16048 Chara braunii HOM05D005369 ORTHO05D006955 3.1e-83 312.8 327 52.3
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 5.4e-80 302.0 210 75.2
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 4.7e-76 288.9 260 60.4
Sabra10G0099400 Salix brachista HOM05D005369 ORTHO05D006955 5.8e-74 282.0 240 64.6
Dinv16512 Davidia involucrata HOM05D005369 ORTHO05D006955 7.8e-71 271.6 138 90.6
Cre02.g082050 Chlamydomonas reinhardtii HOM05D005369 ORTHO05D006955 7.1e-56 221.9 259 51.4
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 7.8e-47 191.8 125 79.2
Haze_27439 Corylus avellana HOM05D005369 ORTHO05D002042 7.6e-42 175.3 294 36.7
MCO09G730 Micromonas commoda HOM05D005369 ORTHO05D006955 5.4e-40 169.1 251 39.4
SEGI_28822 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 2.5e-32 143.7 220 42.3
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 7.6e-26 122.1 135 56.3
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 1.9e-24 117.5 78 73.1
CAN.G216.8 Capsicum annuum HOM05D005369 ORTHO05D006955 3.1e-19 100.1 109 56.0
Medtr3g101280 Medicago truncatula HOM05D005369 ORTHO05D039022 3.0e-14 83.6 54 68.5
EL10Ac6g14510 Beta vulgaris HOM05D005369 ORTHO05D039022 8.8e-14 82.0 40 87.5
Lsat_1_v5_gn_6_27721 Lactuca sativa HOM05D005369 ORTHO05D006955 1.5e-13 81.3 69 62.3
Cfa025377 Carpinus fangiana HOM05D005369 ORTHO05D006955 1.1e-11 75.1 201 30.8
Zm00001eb014670 Zea mays HOM05D005369 ORTHO05D006955 1.1e-11 75.1 35 91.4
SalBow1G2449 Salvia bowleyana HOM05D001761 ORTHO05D001719 4.1e-11 73.2 50 70.0
Actinidia04590 Actinidia chinensis HOM05D002017 ORTHO05D002042 2.0e-10 70.9 198 28.8
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 7.7e-10 68.9 55 69.1
Dinv25524 Davidia involucrata HOM05D002017 ORTHO05D002042 3.2e-08 63.5 130 30.0
BcaB02g10247 Brassica carinata HOM05D002017 ORTHO05D002042 7.2e-08 62.4 237 26.6
Dinv25553 Davidia involucrata HOM05D002017 ORTHO05D002042 2.3e-06 57.4 169 28.4
Lsat_1_v5_gn_4_143101 Lactuca sativa HOM05D002017 ORTHO05D002042 3.0e-06 57.0 118 30.5


User provided reference genes

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