Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 0.0e+00 1280.8 664 100.0
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.0e-273 945.7 667 78.3
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 5.7e-265 917.5 642 79.3
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.4e-263 912.1 723 71.2
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 4.6e-222 775.0 663 66.4
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 4.3e-220 768.5 672 66.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 7.3e-220 767.7 686 65.2
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 9.9e-217 757.3 666 65.5
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 5.8e-201 704.9 615 64.9
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.8e-146 523.9 668 51.9
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.6e-136 488.8 672 50.6
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 4.0e-117 426.4 671 44.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 7.1e-114 415.6 707 45.1
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.5e-113 413.3 669 43.3
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 7.8e-113 412.1 602 48.8
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 3.1e-109 400.2 602 47.3
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 6.0e-105 386.0 702 40.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 4.3e-103 379.8 700 43.7
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 5.6e-103 379.4 544 49.3
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.4e-103 379.0 744 40.9
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 6.2e-102 375.9 740 40.9
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.1e-101 375.2 601 46.6
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.4e-101 374.8 744 40.9
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.0e-101 373.2 710 42.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 6.9e-101 372.5 592 46.6
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 9.0e-101 372.1 599 46.2
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 5.8e-100 369.4 663 42.4
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.7e-99 367.9 723 41.4
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.2e-99 367.5 587 45.0
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 2.7e-97 360.5 668 41.2
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.7e-97 360.5 584 46.6
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.0e-91 342.0 685 41.2
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 3.8e-91 340.1 694 39.3
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 6.5e-91 339.3 688 39.4
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 9.3e-90 335.5 702 39.0
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.2e-89 335.1 709 39.4
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 4.6e-89 333.2 749 37.5
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.3e-87 327.0 672 39.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 8.2e-86 322.4 753 36.3
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.7e-83 314.7 735 36.5
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-83 314.3 690 37.7
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.8e-83 313.5 670 40.0
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 6.1e-81 306.2 696 37.9
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.5e-76 290.0 607 40.0
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 7.7e-76 289.3 698 37.1
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 3.2e-74 283.9 668 37.4
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.1e-73 279.6 695 36.3
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 4.4e-71 273.5 617 39.7
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 7.4e-71 272.7 660 37.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 9.7e-71 272.3 823 33.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.8e-69 268.1 653 38.1
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.5e-68 265.0 689 36.4
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.7e-68 262.7 705 34.3
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 6.5e-67 259.6 622 36.5
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 2.5e-66 257.7 293 55.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.6e-65 255.0 615 38.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.1e-65 254.6 620 35.6
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 4.7e-65 253.4 642 38.0
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 2.3e-64 251.1 809 32.4
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 6.7e-64 249.6 620 36.5
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 8.8e-64 249.2 704 36.1
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.1e-63 248.8 665 36.8
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.5e-63 248.4 641 37.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 2.0e-63 248.1 678 33.5
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.6e-63 247.7 638 37.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 6.3e-62 243.0 809 32.3
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 8.2e-62 242.7 597 38.4
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.1e-61 240.7 734 33.2
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.0e-60 238.0 764 33.1
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.5e-60 237.3 654 35.8
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 5.9e-60 236.5 654 36.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.5e-59 233.0 639 34.4
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.5e-58 231.9 482 41.5
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.1e-57 228.0 667 35.5
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.7e-57 226.9 664 35.5
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 6.1e-57 226.5 521 37.0
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.2e-54 218.0 632 34.8
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.7e-54 217.2 694 32.6
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 4.8e-54 216.9 573 36.3
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 7.0e-53 213.0 684 33.8
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.2e-52 212.2 623 34.5
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 4.5e-52 210.3 541 35.5
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.5e-51 206.5 673 33.7
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.1e-50 205.7 608 34.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 2.5e-50 204.5 556 35.4
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 2.1e-49 201.4 551 34.5
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.3e-48 198.0 634 31.9
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 3.0e-48 197.6 640 33.3
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.0e-47 194.9 551 35.8
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.4e-47 193.7 558 33.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 5.7e-47 193.4 707 31.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 7.5e-47 193.0 500 36.2
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 6.3e-46 189.9 538 35.3
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.1e-45 189.1 558 33.3
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.8e-45 188.3 556 33.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.0e-44 184.9 594 31.3
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.5e-44 183.7 655 31.5
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.0e-43 182.6 502 36.1
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 2.9e-43 181.0 672 30.2
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.9e-43 181.0 483 35.2
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 6.5e-43 179.9 667 29.7
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 6.5e-43 179.9 667 29.7
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.2e-42 177.6 668 29.9
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.1e-41 174.9 559 33.3
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 9.8e-39 166.0 545 32.5
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.9e-38 163.7 545 32.8
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 6.3e-38 163.3 543 32.6
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.4e-37 161.4 655 28.7
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.1e-37 161.0 545 33.0
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 3.1e-37 161.0 545 33.0
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 4.1e-37 160.6 535 31.4
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 8.0e-33 146.4 524 31.7
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 4.0e-32 144.1 344 34.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.8e-31 139.4 673 28.1
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.1e-29 136.0 392 31.4
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.4e-29 135.6 370 38.4
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.3e-27 129.0 674 26.9
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.5e-26 124.8 582 30.1
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.8e-25 121.3 313 36.4
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.0e-23 115.2 285 36.5
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.3e-19 101.7 574 27.2
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 3.9e-19 100.9 197 40.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 6.6e-19 100.1 514 28.2
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.1e-17 95.1 165 42.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.8e-17 94.7 359 31.2
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 1.2e-09 69.3 419 27.0


User provided reference genes

Program Settings