Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.1e-235 817.4 418 100.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.4e-189 663.7 418 81.8
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.6e-183 646.4 419 81.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 3.2e-152 542.3 425 71.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.1e-149 533.9 426 67.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 9.5e-149 530.8 425 70.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 8.9e-147 524.2 395 67.6
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.3e-139 499.6 425 65.2
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.0e-139 498.8 424 66.5
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.2e-138 497.3 397 65.7
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.5e-138 496.9 334 78.1
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 6.4e-137 491.5 424 63.4
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 9.6e-133 477.6 434 59.9
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 9.9e-130 467.6 424 61.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-126 456.8 425 58.8
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-126 456.8 425 58.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.1e-125 454.1 423 58.6
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 4.3e-125 452.2 420 58.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 3.6e-124 449.1 420 58.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.4e-123 446.4 422 57.8
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-122 443.0 423 58.2
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-120 437.6 430 57.4
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 6.9e-115 418.3 423 55.1
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 9.3e-112 407.9 409 57.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.0e-110 404.4 422 54.3
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 5.1e-110 402.1 423 53.7
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.5e-109 400.6 421 53.4
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.8e-107 393.7 423 52.2
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-107 393.7 420 53.1
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.5e-101 374.0 437 50.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 3.1e-99 366.3 420 51.0
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.4e-98 362.8 423 49.9
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 3.8e-97 359.4 442 48.6
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.9e-96 357.1 422 49.5
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 7.2e-96 355.1 426 49.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.7e-95 353.2 427 48.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 3.6e-95 352.8 426 48.8
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 3.0e-94 349.7 432 49.1
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.0e-94 349.7 445 47.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.1e-94 349.0 422 47.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.1e-91 341.3 424 48.3
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.6e-90 336.7 436 45.6
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 7.7e-90 335.1 423 48.0
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 5.0e-89 332.4 350 54.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 4.2e-88 329.3 425 46.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.4e-88 328.2 421 45.6
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.2e-87 327.8 433 46.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.6e-87 327.4 440 44.5
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.8e-86 323.9 422 44.1
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.3e-86 323.6 429 45.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 3.0e-86 323.2 429 46.2
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.7e-86 322.0 429 46.4
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.3e-84 317.8 433 45.0
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.8e-84 316.6 424 47.2
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-84 316.6 426 46.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 3.7e-84 316.2 426 46.0
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.7e-84 316.2 396 47.0
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-83 314.7 424 47.2
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.8e-83 313.9 424 47.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.8e-83 313.9 424 46.7
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.1e-83 312.8 331 53.8
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.1e-83 311.6 424 46.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-82 310.8 424 47.2
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 3.4e-82 309.7 431 47.3
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 4.5e-82 309.3 423 45.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 7.2e-80 302.0 441 41.5
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 9.4e-80 301.6 421 43.2
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.2e-79 301.2 422 44.1
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.1e-79 300.4 426 44.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.6e-79 299.7 450 41.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.9e-78 296.2 436 39.2
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.7e-77 292.4 421 41.1
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.3e-76 291.2 355 48.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 6.3e-76 288.9 411 43.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-75 288.1 371 45.0
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.1e-75 286.2 427 43.8
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 9.1e-75 285.0 425 41.9
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.1e-75 285.0 448 37.7
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.7e-73 280.8 433 39.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 8.5e-73 278.5 382 43.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 8.5e-73 278.5 441 41.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.5e-72 277.7 313 49.8
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.9e-72 277.3 339 47.5
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.2e-72 276.2 438 40.2
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 9.4e-72 275.0 434 38.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.0e-70 271.6 419 40.3
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.0e-70 271.6 436 38.8
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.3e-70 270.4 425 39.5
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 3.0e-70 270.0 444 41.9
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 3.3e-69 266.5 423 40.7
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 7.5e-69 265.4 423 40.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.3e-68 264.6 436 38.3
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.2e-68 261.9 425 40.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.6e-66 257.7 355 42.5
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.3e-65 254.6 354 43.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.6e-63 247.7 326 44.5
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.1e-63 247.3 427 39.3
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.8e-62 244.2 384 41.1
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 8.8e-62 241.9 421 38.5
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 8.8e-62 241.9 399 38.8
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.0e-61 240.7 371 42.9
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 3.4e-61 240.0 433 37.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.7e-60 236.5 427 37.9
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.3e-60 235.7 397 38.8
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 6.3e-60 235.7 407 37.8
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.1e-59 235.0 433 39.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-59 233.8 428 37.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 3.1e-59 233.4 411 37.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.1e-59 233.0 428 38.1
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 5.4e-59 232.6 437 36.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.0e-59 232.3 428 36.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.6e-58 231.1 426 37.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 7.7e-58 228.8 445 37.3
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.2e-56 223.0 394 36.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.8e-54 217.6 436 33.5
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.3e-54 217.2 217 55.3
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.5e-53 214.5 275 44.7
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.7e-52 209.9 351 37.6
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 3.7e-52 209.9 428 35.5
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.2e-50 204.9 275 43.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.8e-49 199.9 355 38.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.5e-48 198.0 385 36.4
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 6.8e-46 189.1 353 38.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.5e-45 188.0 351 36.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.0e-42 177.6 372 34.7
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.0e-42 177.6 245 41.6
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.7e-42 177.2 264 40.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.3e-41 174.9 373 34.3
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.8e-38 164.5 445 30.8
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 4.0e-38 163.3 162 54.3
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 6.8e-38 162.5 259 39.0
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 4.4e-37 159.8 168 54.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-34 151.8 201 47.3
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 7.8e-34 149.1 303 36.6
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 3.1e-30 137.1 250 38.8
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 9.9e-29 132.1 135 54.8
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.9e-28 130.6 172 43.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.9e-28 130.6 390 28.5
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-28 130.2 166 44.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 8.3e-28 129.0 172 43.0
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 8.3e-28 129.0 172 43.0
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-27 127.1 165 44.2
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 8.1e-23 112.5 201 38.3
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 2.0e-21 107.8 87 58.6
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.4e-21 107.1 85 64.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.9e-20 103.2 89 59.6
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 9.2e-19 99.0 129 48.1
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-16 92.0 61 78.7
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 7.6e-13 79.3 57 64.9
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 9.9e-13 79.0 287 28.2
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-12 78.6 140 37.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-11 73.9 62 54.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.2e-11 73.9 93 43.0
arahy.Tifrunner.gnm1.ann1.QFAY72 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.2e-11 73.6 58 60.3
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 4.2e-11 73.6 70 50.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 4.2e-11 73.6 70 50.0
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-09 67.4 67 50.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 3.0e-09 67.4 67 50.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 3.0e-09 67.4 67 50.7
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 3.9e-09 67.0 266 27.1
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 8.7e-09 65.9 81 39.5
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-07 61.2 54 55.6
Glyma.05G088550 Glycine max HOM05D004053 ORTHO05D005065 2.1e-07 61.2 85 40.0
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-06 58.9 55 52.7
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-06 58.5 50 52.0


User provided reference genes

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