Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10381_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 9.4e-47 189.9 99 100.0
Ca_07047_v3 Cicer arietinum L. HOM05D002445 ORTHO05D002690 2.3e-21 105.5 67 86.6
Ca_02602_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.2e-20 103.2 54 96.3
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 3.2e-18 95.1 59 83.1
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 3.5e-17 91.7 59 81.4
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 1.5e-15 86.3 59 76.3
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 3.4e-12 75.1 66 65.2
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 9.9e-12 73.6 83 53.0
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 9.9e-12 73.6 66 62.1
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 1.7e-11 72.8 85 57.6
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 1.9e-10 69.3 91 49.5
Ca_25974_v3 Cicer arietinum L. HOM05D001402 ORTHO05D001302 7.1e-10 67.4 34 97.1
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 1.6e-09 66.2 84 52.4
Glyma.09G171900 Glycine max HOM05D001402 ORTHO05D001302 2.1e-09 65.9 34 88.2
TPR.G14849 Trifolium pratense HOM05D001402 ORTHO05D001302 2.7e-09 65.5 34 94.1
arahy.Tifrunner.gnm1.ann1.CDT3L9 Arachis hypogaea HOM05D001402 ORTHO05D001302 3.5e-09 65.1 34 85.3
arahy.Tifrunner.gnm1.ann1.R9FD0N Arachis hypogaea HOM05D001402 ORTHO05D001302 3.5e-09 65.1 34 85.3
Medtr6g071465 Medicago truncatula HOM05D001402 ORTHO05D001302 7.8e-09 63.9 34 94.1
Glyma.07G106300 Glycine max HOM05D001402 ORTHO05D001302 3.0e-08 62.0 34 85.3
VMungo0464G0675 Vigna mungo HOM05D001402 ORTHO05D001302 5.1e-08 61.2 34 85.3
Psat1g028880 Pisum sativum HOM05D001402 ORTHO05D001302 1.5e-07 59.7 34 88.2
Ca_26123_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 3.3e-07 58.5 33 90.9
Lalb_Chr14g0370531 Lupinus albus HOM05D001402 ORTHO05D001302 5.6e-07 57.8 34 82.4
Ca_14777_v3 Cicer arietinum L. HOM05D001402 ORTHO05D001302 7.3e-07 57.4 30 93.3
Gohir.A03G072400 Gossypium hirsutum HOM05D001402 ORTHO05D001302 7.3e-07 57.4 34 82.4
Gohir.D02G119600 Gossypium hirsutum HOM05D001402 ORTHO05D001302 7.3e-07 57.4 34 82.4
Gorai.005G134400 Gossypium raimondii HOM05D001402 ORTHO05D001302 7.3e-07 57.4 34 82.4
Phvul.002G331900 Phaseolus vulgaris HOM05D001402 ORTHO05D001302 7.3e-07 57.4 34 79.4
Actinidia18881 Actinidia chinensis HOM05D001402 ORTHO05D001302 9.5e-07 57.0 34 79.4
Actinidia35141 Actinidia chinensis HOM05D001402 ORTHO05D001302 9.5e-07 57.0 34 79.4
VMungo0251G3130 Vigna mungo HOM05D001402 ORTHO05D001302 9.5e-07 57.0 34 76.5
EL10Ac8g19488 Beta vulgaris HOM05D001402 ORTHO05D001302 1.2e-06 56.6 34 73.5
Rhsim12G0137100 Rhododendron simsii HOM05D001402 ORTHO05D001302 1.2e-06 56.6 34 79.4
arahy.Tifrunner.gnm1.ann1.6C0LG0 Arachis hypogaea HOM05D001402 ORTHO05D001302 2.1e-06 55.8 34 76.5
arahy.Tifrunner.gnm1.ann1.8GB1FD Arachis hypogaea HOM05D001402 ORTHO05D001302 3.6e-06 55.1 34 76.5
Cc04_g09280 Coffea canephora HOM05D001402 ORTHO05D001302 3.6e-06 55.1 34 76.5
AUR62042458 Chenopodium quinoa HOM05D001402 ORTHO05D001302 4.7e-06 54.7 34 70.6
Hma1.2p1_0471F.1_g159340 Hydrangea macrophylla HOM05D001402 ORTHO05D001302 4.7e-06 54.7 34 76.5
Potri.015G031200 Populus trichocarpa HOM05D001402 ORTHO05D001302 4.7e-06 54.7 34 76.5
Sabra12G0029600 Salix brachista HOM05D001402 ORTHO05D001302 4.7e-06 54.7 34 76.5
Dinv09073 Davidia involucrata HOM05D001402 ORTHO05D001302 6.2e-06 54.3 34 76.5
Lj5C163G9 Lonicera japonica HOM05D001402 ORTHO05D001302 6.2e-06 54.3 34 76.5
Manes.14G173400 Manihot esculenta HOM05D001402 ORTHO05D001302 6.2e-06 54.3 34 73.5
COL.COLO4_20592 Corchorus olitorius HOM05D001402 ORTHO05D001302 8.1e-06 53.9 34 76.5
Lalb_Chr09g0330241 Lupinus albus HOM05D001402 ORTHO05D001302 8.1e-06 53.9 34 73.5
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 8.1e-06 53.9 60 53.3
SalBow5G0235 Salvia bowleyana HOM05D001402 ORTHO05D001302 8.1e-06 53.9 34 73.5


User provided reference genes

Program Settings