Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 2.2e-91 339.0 170 100.0
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 9.1e-74 280.4 170 82.4
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 3.5e-73 278.5 171 81.3
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.8e-67 258.8 168 73.8
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 2.8e-67 258.8 168 73.8
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 1.4e-66 256.5 168 73.8
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 1.4e-66 256.5 173 72.8
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 8.5e-64 247.3 168 70.8
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 5.2e-61 238.0 187 64.2
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 8.8e-61 237.3 186 65.1
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 4.1e-58 228.4 191 64.4
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 7.7e-57 224.2 196 62.2
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.3e-56 223.4 191 63.9
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 1.7e-56 223.0 196 62.2
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 8.6e-56 220.7 190 60.0
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 8.6e-56 220.7 196 60.7
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 8.6e-56 220.7 195 60.5
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 4.3e-55 218.4 196 60.2
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.2e-54 216.9 192 59.9
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 2.1e-54 216.1 178 62.4
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.8e-54 215.7 178 63.5
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 2.8e-54 215.7 191 61.8
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 4.7e-54 214.9 188 60.1
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.7e-54 214.9 178 61.8
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 6.1e-54 214.5 190 59.5
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 8.0e-54 214.2 188 60.1
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 1.8e-53 213.0 188 62.2
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 3.0e-53 212.2 186 60.8
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.0e-53 211.8 192 58.3
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 6.8e-53 211.1 197 58.4
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 6.8e-53 211.1 197 58.4
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 1.2e-52 210.3 188 60.1
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 2.0e-52 209.5 186 60.8
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 3.4e-52 208.8 189 60.8
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 3.4e-52 208.8 200 56.5
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 3.4e-52 208.8 200 56.5
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 5.7e-52 208.0 187 61.5
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 7.5e-52 207.6 187 57.8
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 9.8e-52 207.2 190 59.5
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.3e-51 206.8 186 59.7
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.7e-51 206.5 190 57.4
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 2.2e-51 206.1 190 59.5
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 2.2e-51 206.1 189 57.7
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 2.2e-51 206.1 195 56.4
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 2.9e-51 205.7 190 60.5
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 3.7e-51 205.3 190 57.9
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 6.4e-51 204.5 191 57.1
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 6.4e-51 204.5 188 59.0
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 8.3e-51 204.1 188 57.4
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 8.3e-51 204.1 190 60.0
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 1.1e-50 203.8 187 58.8
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 1.1e-50 203.8 199 56.3
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.4e-50 203.4 193 57.0
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.8e-50 203.0 192 57.3
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 1.8e-50 203.0 185 57.8
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 2.4e-50 202.6 192 58.3
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 3.2e-50 202.2 195 55.4
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 5.4e-50 201.4 195 54.9
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 5.4e-50 201.4 188 57.4
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 7.0e-50 201.1 195 54.9
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 9.2e-50 200.7 191 57.1
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.2e-49 200.3 192 56.8
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.2e-49 200.3 192 56.8
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 3.5e-49 198.7 192 56.2
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 3.5e-49 198.7 184 58.7
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 3.5e-49 198.7 193 55.4
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 3.5e-49 198.7 190 57.4
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 4.6e-49 198.4 192 55.7
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 4.6e-49 198.4 192 56.2
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 5.9e-49 198.0 185 58.4
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 5.9e-49 198.0 191 56.5
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 5.9e-49 198.0 188 58.0
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 7.8e-49 197.6 190 55.3
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.3e-48 196.8 192 56.2
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.3e-48 196.8 192 56.2
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.7e-48 196.4 186 59.1
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.7e-48 196.4 193 56.0
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 1.7e-48 196.4 192 56.2
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 3.0e-48 195.7 183 54.6
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 3.0e-48 195.7 205 51.7
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.0e-48 195.7 168 61.3
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 5.0e-48 194.9 194 55.2
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 5.0e-48 194.9 193 55.4
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 5.0e-48 194.9 190 54.7
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.6e-48 194.5 180 58.9
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 1.1e-47 193.7 193 55.4
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.1e-47 193.7 192 55.2
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.1e-47 193.7 184 57.1
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.5e-47 193.4 197 54.8
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 1.9e-47 193.0 192 54.2
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 2.5e-47 192.6 188 56.4
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 4.3e-47 191.8 195 56.4
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.6e-47 191.4 194 53.1
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 9.5e-47 190.7 193 53.9
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.8e-45 186.4 226 48.7
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 4.0e-45 185.3 194 55.2
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 8.9e-45 184.1 191 55.5
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.7e-43 179.9 233 46.4
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 2.2e-43 179.5 188 53.2
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 3.5e-41 172.2 186 51.6
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 7.8e-41 171.0 185 50.3
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 4.3e-39 165.2 180 50.0
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 6.8e-37 157.9 183 50.8
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.0e-36 156.4 280 38.6
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 7.5e-36 154.5 152 55.9
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 1.7e-32 143.3 98 74.5
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.8e-30 136.0 149 51.7
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.4e-26 123.6 174 42.0
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 2.7e-25 119.4 174 43.1
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 3.2e-18 95.9 172 39.0
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 1.0e-16 90.9 113 50.4
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 5.1e-16 88.6 111 46.8
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.3e-14 84.0 172 34.3
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.5e-12 77.0 54 61.1
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.6e-12 76.3 137 40.1
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.9e-11 72.0 48 68.8
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.9e-10 70.1 201 30.3
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.7e-09 66.2 77 42.9
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 6.2e-06 55.1 37 64.9


User provided reference genes

Program Settings