Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 2.1e-141 505.8 266 100.0
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.0e-124 450.3 266 87.2
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 5.9e-120 434.5 266 85.3
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.3e-119 433.3 267 84.6
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.1e-97 360.5 229 82.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.4e-97 360.1 270 73.7
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.6e-96 356.7 228 81.1
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.6e-96 356.7 229 81.2
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 2.3e-95 352.8 266 72.6
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.0e-92 342.0 261 70.1
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 5.2e-92 341.7 268 68.7
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 6.8e-92 341.3 250 71.2
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.9e-92 340.9 258 70.5
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 5.8e-91 338.2 277 66.8
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 9.8e-91 337.4 263 70.7
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.9e-90 335.9 261 67.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.1e-89 334.0 257 69.6
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.0e-88 329.7 289 64.0
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 3.5e-88 328.9 265 68.7
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 3.9e-87 325.5 285 62.1
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.1e-86 323.9 232 72.8
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.1e-86 323.9 259 68.0
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.1e-86 323.9 260 67.3
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.6e-86 321.6 245 69.0
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.6e-86 321.6 250 68.8
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 7.3e-86 321.2 248 66.9
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.3e-86 321.2 242 69.4
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.6e-85 320.1 233 72.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 3.6e-85 318.9 267 67.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.6e-85 318.9 252 67.9
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.7e-85 318.5 252 67.9
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 2.3e-84 316.2 251 68.5
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 5.8e-83 311.6 266 66.9
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 6.4e-82 308.1 240 67.1
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 6.4e-82 308.1 262 65.3
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.4e-82 308.1 248 64.9
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 5.4e-81 305.1 243 67.9
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 7.1e-81 304.7 245 66.9
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 9.2e-81 304.3 224 70.1
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.1e-80 303.1 244 66.8
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.7e-80 302.8 225 70.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.7e-80 302.8 261 64.8
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 3.9e-79 298.9 231 70.1
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 3.9e-79 298.9 225 70.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.9e-79 298.9 261 64.8
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 6.6e-79 298.1 222 71.2
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.5e-78 297.0 229 71.6
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.5e-78 296.2 244 66.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 3.3e-78 295.8 289 58.8
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.3e-78 295.8 245 63.3
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 5.6e-78 295.0 245 63.3
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 7.3e-78 294.7 247 62.3
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.5e-78 294.3 234 67.1
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.6e-77 293.5 245 62.9
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.8e-77 292.7 243 63.8
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 8.1e-77 291.2 257 60.3
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.8e-76 290.0 225 68.9
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.4e-76 289.7 247 62.8
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 8.9e-76 287.7 219 70.3
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 3.4e-75 285.8 269 60.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 4.4e-75 285.4 226 68.6
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 5.8e-75 285.0 263 61.2
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 9.9e-75 284.3 225 68.4
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 9.9e-75 284.3 240 62.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 9.2e-73 277.7 219 68.0
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 7.8e-72 274.6 270 59.3
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 9.6e-70 267.7 237 60.3
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.6e-70 267.7 267 59.9
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.2e-69 267.3 238 63.0
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.2e-69 267.3 236 64.4
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.8e-69 266.2 242 62.4
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.0e-68 262.3 257 59.9
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 2.4e-65 253.1 225 62.7
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 6.6e-63 245.0 235 62.6
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 8.7e-63 244.6 255 58.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.5e-62 243.0 229 63.3
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 5.6e-62 241.9 267 55.8
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.6e-61 240.4 267 55.1
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.1e-60 237.7 229 62.0
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 2.4e-60 236.5 252 58.7
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.1e-60 236.1 235 58.7
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.0e-60 235.7 200 64.5
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 5.3e-60 235.3 262 55.3
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 9.0e-60 234.6 266 55.6
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.2e-59 234.2 237 57.8
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.0e-59 233.4 192 65.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 9.9e-59 231.1 241 60.2
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.4e-57 227.3 235 55.7
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.4e-57 227.3 217 63.6
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.4e-57 227.3 233 60.1
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 4.6e-56 222.2 383 41.0
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.8e-55 220.3 273 52.4
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 6.7e-55 218.4 209 64.1
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.7e-55 218.4 209 64.1
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.9e-54 216.9 184 63.6
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 2.5e-54 216.5 189 66.1
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 2.5e-54 216.5 189 66.1
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 2.5e-54 216.5 189 66.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 7.4e-54 214.9 199 58.8
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 9.6e-54 214.5 194 60.3
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.6e-53 213.8 199 61.3
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 2.8e-53 213.0 182 65.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.7e-53 212.6 199 58.8
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.4e-52 209.9 220 56.8
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.2e-51 207.6 200 58.5
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.6e-51 206.5 238 53.4
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.8e-51 205.3 237 51.9
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.4e-50 201.8 224 56.7
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.2e-49 199.5 168 63.7
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 8.7e-47 191.4 204 58.3
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 5.6e-46 188.7 240 49.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.9e-44 181.8 273 48.4
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 2.6e-43 179.9 208 53.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.4e-41 174.1 240 50.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 3.9e-39 166.0 225 51.6
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 9.7e-38 161.4 232 45.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.8e-29 132.5 159 53.5
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.1e-28 129.4 148 53.4
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 2.9e-26 123.2 122 55.7
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.4e-25 120.9 126 57.9
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.3e-22 109.8 227 41.0
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 7.4e-22 108.6 234 39.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 6.3e-21 105.5 226 38.9
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 5.0e-18 95.9 56 82.1
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.8e-15 87.4 138 46.4
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 4.8e-13 79.3 60 65.0
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 2.4e-12 77.0 76 53.9
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.7e-10 70.9 126 42.1
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.8e-10 69.7 108 43.5
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 4.2e-09 66.2 88 48.9
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 1.4e-07 61.2 46 67.4
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 4.0e-07 59.7 48 64.6
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 6.7e-07 58.9 46 65.2
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 7.5e-06 55.5 285 26.0


User provided reference genes

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