Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.6e-221 771.2 363 100.0
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 9.6e-198 693.3 359 90.0
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 3.3e-190 668.3 362 87.0
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.6e-189 666.0 357 86.8
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 9.0e-188 660.2 367 83.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 5.9e-187 657.5 369 83.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.0e-186 656.8 357 86.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.9e-186 655.2 365 84.7
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 5.0e-186 654.4 357 86.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 3.1e-172 608.6 369 77.8
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.9e-167 591.7 364 75.8
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-166 589.7 364 75.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.3e-166 588.6 364 75.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.2e-165 585.9 359 75.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.8e-165 584.7 366 74.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.6e-163 578.9 369 72.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.5e-163 578.6 359 74.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.2e-162 575.9 359 74.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.9e-162 575.5 363 73.8
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.9e-162 575.5 363 73.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.5e-161 573.2 353 73.1
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.5e-161 571.2 359 74.1
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 9.4e-161 570.5 367 71.4
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.2e-160 570.1 367 73.0
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.6e-160 569.7 354 74.9
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.7e-160 568.9 360 70.8
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.0e-160 567.4 361 71.2
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.4e-159 566.6 348 73.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.8e-159 566.2 361 72.0
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 4.0e-159 565.1 364 71.2
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.2e-158 563.5 348 73.0
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.1e-156 557.0 361 71.2
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.4e-156 556.6 366 69.9
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-155 553.1 350 71.7
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.7e-155 552.4 366 69.9
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-154 548.5 343 72.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 6.5e-154 547.7 354 70.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.5e-153 546.6 346 70.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.2e-153 545.4 363 68.3
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 4.2e-153 545.0 368 69.6
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.2e-152 543.5 360 67.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.6e-152 542.0 348 70.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 6.1e-152 541.2 363 67.8
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.0e-152 540.8 354 68.9
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.0e-151 540.4 363 68.0
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.0e-151 540.4 364 68.1
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.0e-151 540.4 363 68.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.2e-150 537.0 365 67.7
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.5e-150 536.6 357 67.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 5.7e-150 534.6 314 77.7
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 7.5e-150 534.3 349 69.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 2.8e-149 532.3 352 70.2
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.4e-148 530.0 363 66.4
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 3.1e-148 528.9 363 66.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-148 528.9 335 71.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 7.0e-148 527.7 366 65.8
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 9.1e-148 527.3 363 66.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 9.1e-148 527.3 332 72.3
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-147 526.9 332 72.3
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.0e-147 526.2 363 66.4
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.0e-147 526.2 363 66.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 4.5e-147 525.0 363 66.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 4.5e-147 525.0 363 65.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 7.7e-147 524.2 360 67.5
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-147 524.2 331 71.9
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.3e-146 522.7 363 65.8
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.9e-146 522.3 364 65.4
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.5e-145 520.0 360 65.8
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 5.5e-145 518.1 362 65.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.2e-144 516.9 360 65.6
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.8e-144 515.8 363 67.2
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.0e-143 513.8 350 65.7
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.0e-143 513.8 345 65.5
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 4.0e-143 511.9 358 67.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 6.8e-143 511.1 361 66.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.8e-143 511.1 363 63.4
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 6.8e-143 511.1 360 64.7
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.2e-142 510.4 355 67.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.5e-142 510.0 360 63.1
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.5e-142 510.0 312 71.5
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.6e-142 509.2 364 63.5
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 5.7e-142 508.1 360 65.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 360 64.4
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 360 64.4
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.3e-141 506.9 349 66.2
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.7e-141 506.5 345 64.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-141 506.5 360 63.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.9e-141 505.0 360 65.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 4.1e-140 501.9 353 64.6
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 4.1e-140 501.9 364 64.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.0e-140 501.1 362 64.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 5.0e-138 495.0 453 53.4
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.9e-137 493.0 362 63.0
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.6e-136 488.8 399 58.6
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.1e-136 488.0 369 63.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 8.0e-136 487.6 441 54.0
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.0e-135 485.3 369 63.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.6e-134 482.6 349 63.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 7.0e-132 474.6 346 62.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 7.8e-131 471.1 364 62.6
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.7e-130 469.9 360 59.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 6.6e-130 468.0 339 62.8
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.3e-129 465.7 359 62.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 4.3e-129 465.3 268 79.9
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.8e-128 462.6 369 60.4
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 3.6e-128 462.2 343 59.8
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-127 459.1 288 72.6
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 4.0e-127 458.8 288 72.6
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 5.2e-127 458.4 364 58.5
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.6e-126 456.1 346 58.1
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.6e-126 456.1 288 72.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.2e-123 447.2 317 65.3
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.2e-117 426.4 254 74.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 8.6e-114 414.5 358 54.2
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.7e-107 392.9 339 54.3
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.6e-105 385.2 228 76.8
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 5.6e-105 385.2 194 92.8
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.8e-103 380.2 264 62.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.4e-103 379.8 248 71.0
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-98 364.0 201 81.1
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.9e-98 362.5 321 56.7
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 5.6e-97 358.6 351 49.6
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.6e-97 358.6 287 55.1
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.3e-96 357.5 236 69.1
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.0e-90 336.3 199 74.9
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-87 327.8 308 53.9
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.3e-85 320.9 361 45.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.2e-85 320.1 364 46.2
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 7.9e-83 311.6 259 54.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.0e-82 309.7 367 43.6
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.3e-80 304.3 217 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 6.2e-80 302.0 302 47.7
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.7e-77 293.9 176 76.7
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.3e-76 288.1 199 66.3
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.2e-75 287.7 161 85.7
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.8e-72 276.6 209 63.2
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.9e-66 256.1 157 75.8
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.6e-62 243.4 245 51.4
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 9.1e-47 191.8 106 84.9
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.2e-44 182.2 147 59.2
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 5.0e-37 159.5 223 39.9
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 8.8e-34 148.7 102 67.6
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.3e-28 130.2 102 60.8
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 6.3e-24 115.9 101 53.5
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.5e-22 109.8 97 47.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 6.8e-10 69.3 107 30.8
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 6.4e-08 62.8 128 32.8


User provided reference genes

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