Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 4.1e-84 314.7 160 100.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.0e-54 216.1 138 80.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 2.6e-54 215.7 154 72.1
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 9.2e-52 207.2 142 76.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.8e-47 193.0 159 66.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.0e-47 191.8 159 66.7
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.0e-46 189.5 133 72.2
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.4e-46 188.3 206 57.8
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.7e-45 186.4 169 62.7
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 4.2e-44 181.8 158 63.3
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 6.0e-43 177.9 134 68.7
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 6.4e-37 157.9 160 55.0
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.1e-36 154.5 156 51.9
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.1e-36 154.5 156 51.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.2e-35 153.7 156 51.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.6e-35 153.3 166 56.6
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.1e-35 152.9 166 54.2
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-35 152.9 156 51.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.1e-35 152.9 154 55.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.5e-35 152.1 114 61.4
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 7.8e-35 151.0 133 57.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 7.8e-35 151.0 156 51.3
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.0e-34 149.1 135 59.3
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.0e-34 149.1 131 57.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.5e-33 146.7 167 53.3
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.5e-33 146.7 158 50.6
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.5e-33 146.7 127 52.8
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 3.3e-33 145.6 156 53.2
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.3e-33 145.6 102 66.7
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.3e-33 145.2 132 57.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.3e-33 144.4 104 64.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 7.3e-33 144.4 121 55.4
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 7.3e-33 144.4 122 59.0
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 7.3e-33 144.4 137 56.2
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.3e-32 143.7 157 52.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-32 143.7 159 50.3
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.3e-32 143.7 103 64.1
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.6e-32 143.3 131 53.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.1e-32 142.9 113 61.9
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 6.2e-32 141.4 158 48.7
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.2e-32 141.4 133 55.6
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 6.2e-32 141.4 102 65.7
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-31 140.6 99 63.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.1e-31 140.6 167 48.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.3e-31 138.3 166 47.0
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 9.0e-31 137.5 104 62.5
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.2e-30 137.1 157 51.6
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.2e-30 137.1 170 47.6
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.5e-30 136.7 171 49.1
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.0e-30 136.3 163 51.5
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.4e-30 135.6 143 54.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 3.4e-30 135.6 161 51.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.4e-30 135.6 151 51.7
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 3.4e-30 135.6 72 79.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 4.5e-30 135.2 164 50.6
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 4.5e-30 135.2 149 50.3
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.5e-30 135.2 118 60.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.8e-30 134.8 170 48.8
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 5.8e-30 134.8 138 52.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.6e-30 134.4 146 51.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.6e-30 134.4 168 50.0
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 9.9e-30 134.0 157 49.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.7e-29 133.3 114 57.9
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.7e-29 133.3 155 47.7
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-29 133.3 130 56.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.7e-29 133.3 168 49.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.9e-29 132.5 107 56.1
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.9e-29 132.5 107 56.1
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.9e-29 132.5 107 56.1
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.9e-29 132.5 107 63.6
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.9e-29 131.7 166 47.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 6.4e-29 131.3 97 62.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 8.4e-29 131.0 163 45.4
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 8.4e-29 131.0 135 55.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.1e-28 130.6 148 51.4
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.1e-28 130.6 109 59.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-28 130.2 133 48.9
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.9e-28 129.8 165 46.7
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.4e-28 129.4 106 57.5
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 3.2e-28 129.0 157 48.4
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.2e-28 129.0 130 52.3
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 4.2e-28 128.6 91 65.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.2e-28 128.6 110 57.3
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 5.4e-28 128.3 157 48.4
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.1e-28 127.9 110 55.5
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.1e-28 127.9 97 61.9
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.1e-28 127.9 90 62.2
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 9.3e-28 127.5 116 56.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-27 127.1 107 57.0
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-27 126.7 95 62.1
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.1e-27 126.3 133 51.1
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.1e-27 126.3 108 56.5
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.5e-27 125.6 139 51.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 7.9e-27 124.4 133 49.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.0e-26 124.0 95 58.9
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.3e-26 122.9 179 43.0
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-26 122.5 101 58.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.0e-26 122.5 88 62.5
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 3.9e-26 122.1 127 50.4
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.9e-26 122.1 88 62.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.9e-26 122.1 88 62.5
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 6.7e-26 121.3 159 44.0
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-25 120.6 88 61.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.9e-25 119.8 157 45.9
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.9e-25 119.8 150 48.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.9e-25 119.8 162 44.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 5.6e-25 118.2 133 49.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-24 116.7 133 47.4
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.6e-24 116.7 133 47.4
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-24 116.7 147 43.5
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.8e-24 115.9 155 45.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.7e-24 115.5 163 42.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.2e-24 114.8 143 47.6
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 6.2e-24 114.8 145 49.0
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 6.2e-24 114.8 136 46.3
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.1e-24 114.4 108 52.8
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.1e-23 114.0 143 46.9
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.4e-23 113.6 86 59.3
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.4e-23 113.6 147 43.5
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 9.0e-23 110.9 164 44.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-22 110.5 74 68.9
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.0e-22 109.8 80 61.2
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.0e-22 109.8 83 60.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 4.5e-22 108.6 116 49.1
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 7.6e-22 107.8 61 77.0
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.4e-20 103.6 61 75.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 4.2e-20 102.1 158 43.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.2e-20 102.1 83 53.0
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-17 94.0 72 55.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-17 93.6 72 56.9
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.3e-17 92.4 72 55.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.3e-17 92.4 70 55.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.8e-16 89.4 81 48.1
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.4e-15 87.0 93 52.7
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-15 86.7 72 52.8
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.8e-15 86.7 133 39.8
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-15 86.3 68 51.5
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-15 85.5 82 52.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.0e-15 85.5 68 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 5.3e-15 85.1 81 45.7
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 9.0e-15 84.3 49 75.5
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 2.6e-14 82.8 68 48.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-14 82.8 68 48.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 2.6e-14 82.8 68 48.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.6e-14 82.8 64 60.9
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-14 82.4 68 48.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-14 82.4 68 48.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-14 82.4 68 48.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.4e-14 82.4 68 48.5
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 3.4e-14 82.4 68 48.5
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 4.5e-14 82.0 120 41.7
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 7.6e-14 81.3 144 35.4
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 8.4e-13 77.8 86 44.2
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 8.4e-13 77.8 58 56.9
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.1e-12 77.4 64 56.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.9e-12 76.6 81 42.0
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 5.5e-12 75.1 66 48.5
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 9.3e-12 74.3 109 41.3
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 9.3e-12 74.3 105 41.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 9.3e-12 74.3 108 41.7
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-11 73.6 59 57.6
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.7e-11 72.8 36 88.9
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-10 69.3 112 40.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.1e-09 67.4 103 45.6
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.5e-09 66.2 66 42.4
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.3e-07 58.5 52 48.1
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 4.5e-06 55.5 70 48.6


User provided reference genes

Program Settings