Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.4e-60 236.1 117 100.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.6e-48 196.1 114 86.8
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.2e-47 192.2 114 86.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 5.0e-47 191.0 118 83.9
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.1e-45 185.7 114 85.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.6e-45 184.9 118 80.5
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.8e-39 164.9 116 76.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.0e-39 164.5 115 72.2
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 8.6e-39 163.7 115 75.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 9.5e-38 160.2 110 74.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.1e-37 159.1 102 76.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.8e-37 158.7 102 75.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.8e-37 158.7 102 75.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.8e-37 158.7 102 75.5
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.0e-36 156.8 120 70.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.4e-36 156.4 115 70.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.8e-36 156.0 86 89.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.3e-36 155.6 106 76.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.2e-36 154.5 115 69.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 3.4e-35 151.8 94 79.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.4e-35 151.4 115 69.6
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 7.5e-35 150.6 117 67.5
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 9.8e-35 150.2 117 67.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.3e-34 149.8 98 76.5
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.8e-34 148.7 116 68.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.9e-34 147.9 116 65.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.9e-34 147.9 98 77.6
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.3e-34 147.1 85 82.4
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.1e-33 146.7 94 78.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.4e-33 146.4 115 69.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.4e-33 146.4 98 77.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.4e-33 146.4 89 79.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.8e-33 146.0 87 81.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.4e-33 145.6 115 64.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.4e-33 145.6 118 67.8
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-33 145.6 95 78.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.1e-33 145.2 87 81.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.1e-33 144.8 118 67.8
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 5.4e-33 144.4 93 76.3
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.4e-33 144.4 115 66.1
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 5.4e-33 144.4 115 66.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 7.0e-33 144.1 104 74.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 7.0e-33 144.1 115 65.2
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 7.0e-33 144.1 115 63.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.0e-33 144.1 100 74.0
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 9.2e-33 143.7 110 66.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.2e-32 143.3 116 67.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.6e-32 142.9 111 64.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.6e-32 142.9 115 69.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-32 142.9 96 75.0
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.0e-32 142.5 83 81.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.7e-32 142.1 94 74.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.7e-32 142.1 114 68.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.5e-32 141.7 111 64.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 3.5e-32 141.7 115 62.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.5e-32 141.7 115 62.6
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.9e-32 141.0 111 61.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 7.8e-32 140.6 92 79.3
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.8e-32 140.6 121 62.8
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.8e-32 140.6 100 72.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-31 140.2 115 61.7
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.0e-31 140.2 98 73.5
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.0e-31 140.2 111 64.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.0e-31 140.2 100 71.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-31 140.2 87 80.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.3e-31 139.8 115 61.7
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.7e-31 139.4 111 66.7
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-31 139.4 115 61.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 2.3e-31 139.0 110 66.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-31 139.0 115 61.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.3e-31 139.0 115 61.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.3e-31 139.0 96 69.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-31 138.7 115 61.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.9e-31 138.7 114 67.5
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.9e-31 138.7 97 73.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.8e-31 138.3 115 61.7
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 5.0e-31 137.9 115 60.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 8.6e-31 137.1 85 77.6
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 8.6e-31 137.1 108 64.8
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-30 136.7 102 69.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.1e-30 136.7 116 62.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.1e-30 136.7 96 67.7
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.5e-30 135.6 135 57.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.3e-30 135.2 80 80.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 3.3e-30 135.2 96 70.8
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.6e-30 134.4 113 62.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 7.3e-30 134.0 80 81.2
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 9.5e-30 133.7 115 60.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.1e-29 132.5 116 61.2
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.1e-29 132.5 83 74.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.1e-29 132.5 83 77.1
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.1e-29 132.5 91 72.5
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.8e-29 132.1 97 69.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 3.6e-29 131.7 88 76.1
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.7e-29 131.3 96 69.8
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.7e-29 131.3 96 69.8
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.7e-29 131.3 96 69.8
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 6.1e-29 131.0 115 59.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 6.1e-29 131.0 105 62.9
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.0e-28 130.2 104 70.2
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.0e-28 130.2 88 75.0
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.8e-28 129.4 110 62.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-28 129.0 96 67.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-28 129.0 128 57.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.2e-28 127.9 84 75.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 5.2e-28 127.9 115 58.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 6.8e-28 127.5 80 78.8
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.9e-28 127.1 92 68.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.2e-27 126.7 119 58.8
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-27 126.7 156 49.4
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.0e-27 125.9 86 70.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-27 125.9 89 73.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.8e-27 124.4 108 58.3
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 7.5e-27 124.0 103 61.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 9.8e-27 123.6 83 72.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 9.8e-27 123.6 113 58.4
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-26 123.2 77 68.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-26 123.2 77 68.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.7e-26 122.9 95 65.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-26 122.9 82 74.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.9e-26 122.1 117 59.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 6.4e-26 120.9 104 62.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-25 120.2 128 54.7
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.1e-25 120.2 74 77.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.4e-25 119.0 110 58.2
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.4e-25 119.0 77 67.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.5e-24 115.2 72 76.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.5e-24 115.2 85 64.7
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.0e-23 113.6 88 64.8
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.3e-23 113.2 86 65.1
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.8e-21 105.5 85 60.0
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.8e-21 105.5 76 72.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 6.2e-21 104.4 89 58.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.0e-21 104.0 92 59.8
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.0e-21 104.0 62 80.6
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.1e-20 103.6 89 64.0
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.4e-19 98.2 101 55.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.5e-19 97.4 93 59.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-18 96.7 75 66.7
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.2e-18 95.9 70 70.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.7e-18 95.1 69 69.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.9e-18 94.7 94 56.4
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.1e-15 84.7 86 47.7
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 5.1e-15 84.7 63 66.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.1e-14 83.6 83 47.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.5e-14 83.2 51 76.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.9e-14 82.8 50 80.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.9e-14 82.8 54 75.9
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.5e-14 82.4 65 58.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.3e-14 82.0 82 52.4
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.6e-14 81.3 77 54.5
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.6e-14 81.3 77 54.5
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 5.6e-14 81.3 74 58.1
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.2e-12 74.7 55 63.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.0e-11 72.8 72 45.8
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.4e-09 66.6 46 69.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-08 63.5 50 68.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 7.8e-08 60.8 78 48.7
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 6.6e-07 57.8 51 58.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 3.3e-06 55.5 66 40.9
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 3.3e-06 55.5 66 40.9
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 7.3e-06 54.3 72 44.4


User provided reference genes

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