Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 5.6e-186 654.1 315 100.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.4e-157 559.7 301 87.7
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.1e-156 555.8 308 85.7
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.8e-144 516.2 290 83.4
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 8.2e-137 490.7 300 78.0
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.9e-133 479.6 294 77.6
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.8e-131 473.0 306 74.8
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 4.4e-130 468.4 284 77.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.2e-127 460.3 256 83.2
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.2e-127 460.3 306 71.9
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.7e-127 459.1 332 69.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.3e-113 413.7 290 67.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.8e-112 409.8 291 66.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.8e-112 409.8 290 68.3
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 9.2e-112 407.5 291 67.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.5e-111 405.2 279 68.5
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.8e-111 404.4 291 65.6
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.3e-110 402.9 290 65.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.3e-110 402.9 291 65.6
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.0e-110 401.7 291 65.6
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.6e-109 398.3 276 67.0
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 9.5e-109 397.5 297 64.3
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.8e-108 396.0 301 63.1
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 4.7e-108 395.2 288 65.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 8.0e-108 394.4 280 65.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 8.9e-107 391.0 288 63.9
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.5e-106 390.2 280 67.1
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.5e-106 387.9 285 65.3
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.4e-104 382.9 291 64.9
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.2e-104 382.5 292 65.1
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 3.2e-104 382.5 290 64.1
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.0e-103 379.8 280 65.4
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.0e-103 379.8 271 66.4
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 7.8e-103 377.9 283 62.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.3e-102 377.1 285 62.8
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 3.9e-102 375.6 258 67.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 5.0e-102 375.2 279 65.2
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.5e-101 373.6 287 60.3
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.5e-101 373.6 273 64.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.5e-101 373.6 269 64.3
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.9e-101 373.2 281 63.3
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.3e-101 372.1 290 62.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 7.3e-101 371.3 283 62.9
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 9.5e-101 370.9 290 61.0
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.6e-100 370.2 290 60.7
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.8e-100 369.4 246 68.7
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.8e-100 369.4 289 60.9
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 3.6e-100 369.0 293 58.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 4.7e-100 368.6 290 62.1
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 6.2e-100 368.2 271 64.6
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 6.2e-100 368.2 290 60.3
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 3.1e-99 365.9 283 61.8
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 5.2e-99 365.2 298 63.1
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 8.9e-99 364.4 293 59.4
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 8.9e-99 364.4 286 59.4
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.2e-98 364.0 278 60.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.5e-98 363.6 252 65.1
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-98 363.6 271 62.4
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.6e-98 362.8 261 65.5
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.4e-98 362.5 266 65.4
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 5.8e-98 361.7 276 61.2
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 9.8e-98 360.9 281 60.1
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.3e-97 360.5 309 56.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-96 357.5 290 58.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.2e-96 355.9 274 61.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 4.1e-96 355.5 286 59.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 2.7e-95 352.8 281 61.9
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.7e-95 352.8 233 68.7
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.0e-94 350.9 279 59.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.9e-94 349.0 293 56.3
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.5e-93 347.1 278 61.2
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.9e-93 346.7 277 61.0
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.9e-93 346.7 292 58.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.5e-93 346.3 285 58.2
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.3e-93 344.7 265 63.4
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.1e-92 343.2 291 57.4
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.1e-92 341.3 274 59.1
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 4.0e-91 339.0 285 55.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.8e-91 338.2 252 63.1
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.8e-91 338.2 279 59.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 4.4e-90 335.5 294 57.5
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.4e-90 335.5 274 58.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 5.8e-90 335.1 278 58.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 6.4e-89 331.6 259 59.8
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 2.4e-88 329.7 279 57.3
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.4e-88 329.7 263 60.5
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 4.6e-87 325.5 268 60.1
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.9e-86 322.4 288 52.8
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 5.1e-86 322.0 268 57.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.8e-83 313.5 275 54.9
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.7e-78 297.0 256 54.3
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 5.1e-78 295.4 234 59.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.6e-76 290.4 277 48.4
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.6e-74 283.1 258 53.9
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 8.4e-73 278.1 290 50.3
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 9.3e-72 274.6 274 53.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.6e-71 272.3 272 50.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.0e-70 271.2 287 50.5
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.3e-70 270.8 271 52.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-69 267.3 272 50.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-69 267.3 272 50.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 3.3e-69 266.2 275 52.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-68 264.2 275 49.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 4.8e-68 262.3 280 49.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 6.2e-68 261.9 279 49.1
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 6.2e-68 261.9 256 49.6
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-67 260.8 271 48.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-67 260.4 275 47.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.4e-67 260.0 290 48.3
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 4.0e-67 259.2 288 46.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.4e-66 256.1 273 48.0
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 7.6e-66 255.0 279 46.6
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.9e-65 253.1 256 48.4
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 4.6e-63 245.7 277 46.6
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 4.9e-57 225.7 281 42.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.9e-49 199.1 240 44.6
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.5e-49 198.7 243 41.6
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.7e-47 193.4 172 49.4
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.7e-46 188.3 193 48.2
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 6.3e-44 182.2 245 38.4
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.4e-38 164.5 228 39.5
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 9.7e-37 158.3 272 36.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-35 154.8 193 41.5
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-34 151.0 193 40.4
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-34 150.6 193 41.5
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-34 150.6 243 37.4
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-33 147.9 242 36.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 2.9e-33 146.7 183 44.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 2.9e-33 146.7 183 42.1
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 5.0e-33 146.0 198 40.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 6.5e-33 145.6 181 43.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-31 140.6 274 34.3
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 3.6e-31 139.8 198 40.4
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.8e-28 130.2 149 42.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.4e-27 127.9 145 43.4
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 5.3e-27 125.9 155 42.6
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.4e-26 123.2 88 65.9
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 5.0e-25 119.4 145 43.4
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.0e-22 111.7 178 34.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 4.8e-20 102.8 198 34.8
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 4.8e-20 102.8 198 34.8
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-15 88.2 145 39.3
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-15 85.9 62 62.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 6.1e-15 85.9 62 62.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 4.4e-13 79.7 68 51.5
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.7e-13 79.3 95 41.1
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-11 74.3 98 40.8


User provided reference genes

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