Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 4.9e-127 458.0 231 100.0
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.4e-121 439.9 230 96.1
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.6e-120 434.1 231 93.9
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 8.4e-119 430.6 230 92.6
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.4e-110 403.3 229 86.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 2.5e-110 402.5 231 87.0
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 2.5e-110 402.5 227 85.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 5.5e-110 401.4 229 87.3
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.7e-109 399.1 231 84.0
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.4e-105 386.0 228 83.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.2e-104 383.6 228 82.9
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 6.7e-100 367.9 229 79.0
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.1e-91 340.5 224 73.7
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 3.3e-91 339.0 224 71.9
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 4.3e-91 338.6 229 72.1
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.8e-90 335.9 225 72.9
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 3.7e-90 335.5 228 71.5
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 6.3e-90 334.7 225 72.9
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 6.3e-90 334.7 225 72.9
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 4.1e-89 332.0 231 71.4
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 5.3e-89 331.6 226 72.6
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 5.3e-89 331.6 229 72.1
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 5.3e-89 331.6 229 72.1
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 6.9e-89 331.3 232 70.3
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 9.1e-89 330.9 224 71.4
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.2e-88 330.5 224 72.8
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 2.0e-88 329.7 225 70.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.0e-88 329.7 228 69.7
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 1.7e-87 326.6 228 69.7
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.8e-87 325.5 228 69.3
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.8e-87 325.5 228 69.3
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.5e-87 324.3 228 68.9
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.4e-86 323.6 223 70.0
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.9e-86 323.2 225 69.3
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.9e-86 323.2 224 69.2
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.2e-86 322.4 227 69.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.2e-86 322.4 227 70.0
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.2e-86 322.0 221 70.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 4.2e-86 322.0 227 68.7
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 5.5e-86 321.6 225 68.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.1e-85 319.7 227 68.7
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 2.1e-85 319.7 230 69.6
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.7e-85 319.3 225 69.8
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 4.7e-85 318.5 221 70.6
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 6.1e-85 318.2 224 67.9
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 6.1e-85 318.2 232 67.7
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.1e-85 318.2 232 67.7
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 6.1e-85 318.2 239 65.3
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 7.9e-85 317.8 225 70.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.8e-84 316.6 224 67.9
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 3.0e-84 315.8 232 66.8
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 5.1e-84 315.1 231 66.7
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 8.8e-84 314.3 225 67.1
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.1e-83 313.9 225 68.9
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.1e-83 313.9 226 68.6
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-83 313.9 223 70.0
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.5e-83 313.5 221 70.1
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.0e-83 313.2 231 66.2
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 4.4e-83 312.0 223 67.7
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 5.7e-83 311.6 227 65.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 7.4e-83 311.2 223 68.6
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 7.4e-83 311.2 227 68.7
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 9.7e-83 310.8 223 67.7
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.7e-82 310.1 237 66.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.2e-82 309.7 221 68.8
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 2.8e-82 309.3 231 66.7
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.8e-82 309.3 230 66.1
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 3.7e-82 308.9 224 67.4
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 4.8e-82 308.5 232 67.7
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 6.3e-82 308.1 224 67.0
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 8.2e-82 307.8 231 66.2
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 8.2e-82 307.8 225 67.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 5.3e-81 305.1 231 64.5
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 5.3e-81 305.1 231 64.5
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 7.0e-81 304.7 229 64.2
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.0e-81 304.7 248 62.5
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.5e-80 303.5 231 63.2
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 4.5e-80 302.0 224 67.0
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.5e-80 302.0 221 68.3
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 6.5e-79 298.1 227 64.8
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 6.5e-79 298.1 227 64.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 8.5e-79 297.7 227 63.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 4.2e-78 295.4 230 63.9
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 9.4e-78 294.3 229 62.9
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 9.4e-78 294.3 229 62.9
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 9.4e-78 294.3 229 62.9
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.2e-77 293.9 235 63.8
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.0e-76 290.8 226 63.3
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 5.2e-76 288.5 229 61.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.5e-75 287.0 224 62.5
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 1.5e-75 287.0 218 65.1
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 2.0e-75 286.6 230 62.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.3e-74 283.9 218 64.2
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.8e-74 282.7 218 63.3
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 6.3e-74 281.6 218 63.8
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 2.4e-73 279.6 219 63.0
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.6e-72 276.2 229 62.0
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.7e-72 274.6 320 47.8
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.1e-70 270.8 217 60.8
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 5.5e-70 268.5 210 62.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 3.6e-69 265.8 185 68.1
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 8.3e-66 254.6 208 57.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 4.1e-65 252.3 184 67.9
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.7e-64 249.6 212 55.7
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 5.5e-62 241.9 425 37.4
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 4.1e-57 225.7 208 53.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 3.4e-51 206.1 209 45.9
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.8e-49 200.3 162 63.0
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.3e-47 193.4 128 71.1
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.5e-46 189.9 206 46.6
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.2e-45 187.6 117 74.4
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 9.8e-43 177.9 113 74.3
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.1e-41 174.5 107 75.7
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.0e-40 170.2 106 75.5
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 7.8e-40 168.3 122 68.9
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.3e-31 141.0 115 63.5
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.9e-31 139.4 99 66.7
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 1.1e-30 137.9 116 63.8
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 3.3e-30 136.3 130 54.6
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.8e-21 106.7 228 29.8
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 2.2e-18 97.1 83 56.6
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.1e-16 90.5 88 51.1
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 3.0e-15 86.7 67 62.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.0e-11 73.9 77 49.4
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.2e-09 66.6 104 43.3


User provided reference genes

Program Settings