Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.2e-193 677.9 366 100.0
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.3e-145 517.7 398 73.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.2e-134 483.8 404 71.8
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 3.0e-130 469.2 404 69.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.8e-127 459.9 399 68.7
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.7e-122 443.4 372 71.0
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.1e-119 434.1 405 64.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 4.0e-119 432.2 406 64.8
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.0e-118 429.9 364 67.9
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 7.6e-118 427.9 379 68.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.9e-117 426.0 377 67.9
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 3.2e-116 422.5 416 64.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 7.9e-115 417.9 363 65.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.1e-113 414.1 363 66.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.5e-113 412.9 361 66.5
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.5e-113 412.9 372 64.5
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.3e-113 412.5 399 63.4
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.1e-111 407.5 386 63.0
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 6.9e-111 404.8 366 65.3
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 2.6e-110 402.9 360 64.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.4e-110 402.5 351 67.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.4e-110 402.5 351 67.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.6e-110 401.4 361 65.4
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.4e-109 397.9 351 66.4
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.1e-108 397.5 365 64.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.9e-108 396.7 376 63.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.9e-108 396.7 373 63.3
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 5.5e-108 395.2 463 57.2
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.6e-107 393.7 355 65.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.1e-107 393.3 360 63.1
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.7e-107 392.9 361 65.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 6.0e-107 391.7 296 77.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.9e-106 389.0 376 63.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 6.7e-106 388.3 335 68.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.7e-106 387.9 373 61.7
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 5.7e-105 385.2 372 63.2
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-104 384.0 373 62.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.6e-104 383.6 363 64.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.7e-104 382.5 373 61.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.1e-103 380.9 387 59.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.4e-103 379.8 385 60.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.0e-102 376.7 439 54.7
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 3.4e-102 375.9 400 60.2
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.8e-101 372.5 373 61.1
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.8e-101 372.5 373 61.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 6.5e-101 371.7 367 62.7
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.2e-100 369.4 363 61.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.2e-100 369.4 434 53.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.2e-100 369.0 384 60.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.6e-99 365.5 367 62.4
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.0e-98 362.8 373 58.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.9e-97 360.1 379 58.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 5.7e-97 358.6 375 58.4
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.4e-95 354.0 386 59.3
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.8e-95 353.6 379 58.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.4e-95 353.2 365 58.9
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 6.9e-95 351.7 380 57.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.0e-95 351.3 380 58.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 9.0e-95 351.3 390 55.6
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.5e-94 350.5 387 58.9
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.4e-94 349.4 305 65.9
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 3.4e-94 349.4 333 64.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.3e-93 347.4 380 59.7
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.7e-91 339.7 435 51.7
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 4.6e-91 339.0 477 49.1
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 5.1e-90 335.5 438 52.5
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.3e-89 332.8 427 52.5
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.3e-89 332.8 430 52.1
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.3e-89 332.8 418 53.1
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.8e-88 328.9 393 55.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.8e-87 327.0 397 54.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.1e-87 326.2 365 59.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.3e-87 325.5 363 55.1
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 6.9e-87 325.1 473 46.9
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.0e-86 323.6 441 50.8
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.9e-85 319.7 356 55.6
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.9e-85 319.7 380 53.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.8e-85 319.3 345 58.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.8e-85 319.3 471 46.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.4e-84 317.4 332 56.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.9e-84 317.0 309 60.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.5e-84 316.6 309 59.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-83 313.9 380 55.3
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.1e-83 313.5 395 53.7
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.6e-81 306.6 384 51.3
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.3e-81 306.2 391 52.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.3e-81 306.2 414 51.0
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 7.4e-81 305.1 381 50.7
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.2e-80 303.5 386 51.3
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.4e-79 300.8 368 51.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.4e-79 300.8 465 46.2
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.1e-79 299.3 387 49.6
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.2e-78 297.7 387 51.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 4.5e-78 295.8 456 44.3
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.2e-76 289.7 454 45.8
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 4.2e-76 289.3 353 54.7
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 5.5e-76 288.9 479 43.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.6e-75 287.3 347 53.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.6e-75 286.2 454 44.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 8.0e-75 285.0 478 43.7
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.8e-74 283.9 456 45.2
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.0e-74 283.1 404 47.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 5.2e-74 282.3 453 44.4
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 8.8e-74 281.6 453 45.7
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 8.8e-74 281.6 453 45.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-73 281.2 452 44.7
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.5e-73 280.8 383 48.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.5e-73 280.8 346 52.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.3e-72 275.4 382 49.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.5e-70 269.2 414 44.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.0e-69 268.1 327 56.3
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.2e-69 266.9 346 49.4
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.2e-68 262.7 474 42.2
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.0e-66 256.5 331 52.3
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 8.8e-66 255.0 341 50.4
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.4e-65 253.1 320 54.7
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.7e-65 252.3 351 50.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.0e-61 241.5 435 43.9
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 8.5e-61 238.4 353 47.9
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 5.5e-60 235.7 261 57.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 4.9e-56 222.6 387 43.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.0e-53 214.9 130 85.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 9.5e-52 208.4 386 41.2
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.1e-51 205.7 451 38.4
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 8.0e-51 205.3 268 50.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.3e-50 203.8 363 42.1
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.3e-44 183.3 349 41.0
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 6.4e-40 169.1 365 40.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 2.5e-36 157.1 266 45.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.6e-29 132.1 103 69.9
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 3.4e-25 120.2 95 68.4
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.9e-24 117.1 77 79.2
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.6e-22 111.3 256 36.7
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 6.0e-22 109.4 102 62.7
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.3e-20 103.2 84 69.0
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.3e-20 103.2 66 75.8
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.2e-19 101.7 327 30.6
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.6e-19 101.3 353 33.4
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-18 98.2 67 70.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-18 98.2 64 73.4
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.4e-18 97.4 64 71.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.9e-18 95.9 79 59.5
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.3e-16 91.7 188 42.0
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.4e-16 89.4 143 43.4
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.4e-15 86.3 58 70.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 8.1e-11 72.4 104 46.2
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 3.8e-08 63.5 97 43.3
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-06 58.2 246 30.1


User provided reference genes

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