Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.8e-188 662.5 355 100.0
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.6e-144 516.5 355 75.2
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 8.7e-143 510.8 355 77.7
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.3e-135 486.9 356 73.3
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 2.4e-129 466.1 308 78.2
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 7.4e-126 454.5 352 69.6
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 8.1e-125 451.1 304 77.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.9e-121 439.9 318 72.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.2e-120 437.2 358 67.0
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.2e-120 437.2 300 76.0
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 6.2e-117 424.9 298 72.5
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 6.2e-117 424.9 308 72.1
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 6.2e-117 424.9 305 70.5
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.1e-116 422.5 299 70.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 1.2e-115 420.6 300 72.0
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.2e-115 420.6 296 72.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.0e-115 419.9 296 73.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 2.6e-115 419.5 296 73.3
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.6e-115 419.5 296 72.6
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.5e-115 418.7 302 70.9
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 4.5e-115 418.7 298 72.1
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 4.5e-115 418.7 296 71.6
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 7.6e-115 417.9 317 67.8
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.7e-114 416.8 302 71.9
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.2e-114 416.4 305 71.1
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.9e-114 416.0 296 71.3
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 3.8e-114 415.6 352 64.8
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.8e-114 415.6 296 70.9
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 8.4e-114 414.5 296 71.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.4e-113 413.7 306 68.3
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.4e-113 413.7 294 71.8
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 2.5e-113 412.9 255 80.0
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 3.2e-113 412.5 302 71.2
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.2e-113 412.5 294 72.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 4.2e-113 412.1 300 72.7
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 5.5e-113 411.8 295 71.2
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.1e-113 411.4 298 71.1
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 9.3e-113 411.0 296 71.6
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 9.3e-113 411.0 298 69.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.2e-112 410.6 313 68.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.6e-112 410.2 318 69.2
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 2.1e-112 409.8 302 70.5
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.5e-112 409.1 298 70.5
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 4.6e-112 408.7 299 70.6
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.6e-112 408.7 306 68.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 4.6e-112 408.7 306 68.3
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 7.9e-112 407.9 315 67.9
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-111 407.5 303 70.0
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.0e-111 407.5 305 68.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.3e-111 407.1 306 68.0
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.3e-111 406.4 303 69.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 3.9e-111 405.6 307 67.8
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.7e-111 404.8 353 61.8
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.1e-110 404.1 308 68.2
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.1e-110 404.1 298 70.1
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.7e-110 401.7 306 67.0
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.7e-110 401.7 306 67.0
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 5.7e-110 401.7 309 67.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 5.7e-110 401.7 300 69.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 1.3e-109 400.6 308 67.5
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 1.6e-109 400.2 306 66.3
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 1.6e-109 400.2 306 66.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.2e-109 399.8 296 69.6
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 3.7e-109 399.1 302 67.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 3.7e-109 399.1 283 69.3
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 4.8e-109 398.7 296 69.6
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 4.8e-109 398.7 299 68.9
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.8e-109 398.7 296 69.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 6.3e-109 398.3 302 68.2
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.1e-108 397.5 316 65.8
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.1e-108 397.5 302 67.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.4e-108 396.4 300 68.0
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 6.9e-108 394.8 293 71.7
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 9.0e-108 394.4 297 68.4
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.4e-107 392.5 331 63.7
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 3.4e-107 392.5 251 78.1
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 5.9e-107 391.7 305 67.2
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 3.8e-106 389.0 306 65.4
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 6.5e-106 388.3 296 68.2
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.7e-104 382.9 301 65.4
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.7e-104 382.9 299 66.6
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 3.9e-103 379.0 256 73.0
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 8.8e-103 377.9 270 71.5
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.1e-102 377.5 297 68.7
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 4.3e-102 375.6 301 64.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 7.4e-102 374.8 281 69.0
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 3.7e-101 372.5 290 67.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.5e-97 359.8 227 77.1
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 4.7e-96 355.5 294 64.3
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 7.9e-96 354.8 264 68.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 2.6e-91 339.7 298 61.1
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.9e-90 336.3 292 57.9
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.1e-89 334.3 299 61.2
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.2e-83 314.3 305 58.7
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 4.5e-83 312.4 271 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 6.3e-77 292.0 291 54.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 7.0e-76 288.5 314 49.0
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 3.2e-73 279.6 163 82.2
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 8.8e-71 271.6 265 56.2
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.5e-67 259.2 169 75.1
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.8e-66 256.1 299 46.2
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 4.5e-59 232.6 221 50.2
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.7e-58 230.7 183 61.2
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.8e-56 223.4 140 75.7
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.6e-51 207.6 182 65.4
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-50 204.5 132 78.0
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 5.0e-50 202.6 126 77.8
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 5.0e-50 202.6 126 77.8
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.5e-46 191.0 132 74.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.6e-40 171.0 279 36.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 5.8e-38 162.5 300 35.7
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 5.1e-34 149.4 107 73.8
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 4.2e-28 129.8 243 36.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.1e-27 127.5 116 61.2
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.9e-21 107.1 202 38.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.4e-21 105.5 53 88.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 3.3e-17 93.6 93 53.8
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 7.3e-17 92.4 61 67.2
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 4.8e-16 89.7 79 58.2
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 4.6e-11 73.2 130 38.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.3e-10 71.6 138 40.6
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 6.7e-10 69.3 38 84.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-09 68.2 130 36.9
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.8e-08 63.9 79 48.1
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.8e-08 63.9 79 48.1


User provided reference genes

Program Settings