Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 0.0e+00 1734.9 889 100.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 0.0e+00 1346.3 905 79.0
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 0.0e+00 1211.1 870 74.9
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 0.0e+00 1182.9 997 66.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 0.0e+00 1080.1 910 67.0
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 3.3e-300 1035.0 915 64.8
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 5.3e-298 1027.7 911 64.3
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.4e-282 976.5 914 61.9
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.9e-271 939.5 912 60.7
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 2.8e-267 925.6 911 59.7
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 6.5e-256 887.9 908 57.8
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 8.5e-139 498.8 1088 35.9
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 6.3e-134 482.6 1083 35.2
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 9.1e-133 478.8 1098 34.4
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 7.3e-114 416.0 1103 32.1
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 4.1e-109 400.2 990 34.4
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 3.5e-108 397.1 921 34.3
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 7.3e-106 389.4 1004 33.6
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.2e-104 383.3 1012 32.5
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.6e-103 380.9 1036 32.7
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 3.4e-103 380.6 944 33.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.4e-103 380.2 1038 32.2
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.9e-102 377.5 759 36.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 4.9e-102 376.7 1007 32.9
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 2.4e-101 374.4 1075 31.5
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.4e-101 373.2 1015 32.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 7.1e-101 372.9 1058 30.7
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 6.0e-100 369.8 1019 31.9
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 1.0e-99 369.0 1052 31.3
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.3e-99 367.9 562 40.9
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 3.9e-99 367.1 752 34.6
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 8.6e-99 365.9 1011 32.1
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.9e-98 364.8 1021 31.7
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 4.3e-98 363.6 871 33.6
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 6.2e-97 359.8 1028 31.1
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-96 359.0 1052 31.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 2.3e-96 357.8 1003 31.5
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 9.9e-95 352.4 881 31.4
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.9e-94 350.1 888 33.0
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 2.4e-93 347.8 983 30.6
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 5.4e-93 346.7 754 35.1
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 5.4e-93 346.7 956 32.5
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 7.1e-93 346.3 1082 29.2
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.6e-92 345.1 614 38.1
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 6.0e-92 343.2 1019 30.6
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 7.8e-92 342.8 953 32.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.7e-91 341.7 1057 30.5
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.7e-91 341.7 943 31.9
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.9e-91 340.5 819 33.2
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.6e-89 335.1 1081 29.5
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 2.1e-89 334.7 746 34.9
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-89 334.0 1001 31.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.1e-89 332.8 892 32.0
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 5.8e-87 326.6 982 30.3
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 7.6e-87 326.2 913 29.4
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.7e-83 315.1 1007 29.6
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 5.1e-83 313.5 742 33.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 3.3e-82 310.8 177 86.4
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 3.6e-81 307.4 947 30.5
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.4e-80 304.7 939 30.6
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 2.4e-80 304.7 538 37.0
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.1e-80 304.3 893 31.8
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 5.4e-77 293.5 603 34.2
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.6e-76 292.0 986 29.5
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.7e-76 291.2 796 31.9
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 7.9e-76 289.7 886 28.9
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.0e-75 289.3 553 35.4
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 1.5e-74 285.4 568 35.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.2e-71 275.8 924 29.2
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 1.5e-71 275.4 937 28.6
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.0e-71 275.0 912 28.8
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.4e-71 274.2 624 32.9
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 4.5e-71 273.9 970 27.9
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 5.8e-71 273.5 876 29.2
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 9.9e-71 272.7 981 27.4
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.7e-70 271.9 890 29.4
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 2.2e-70 271.6 999 27.7
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.2e-70 271.6 898 28.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 3.8e-70 270.8 893 29.6
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 3.8e-70 270.8 936 28.3
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 6.4e-70 270.0 948 29.3
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.4e-69 268.9 873 29.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.4e-69 268.1 988 27.7
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.2e-69 267.7 580 33.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.0e-67 262.7 532 34.6
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.0e-67 262.7 880 28.0
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.0e-67 262.7 1043 27.5
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.3e-67 262.3 397 39.3
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 3.9e-67 260.8 901 28.7
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.9e-66 258.5 637 32.0
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 7.4e-66 256.5 462 35.5
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.6e-65 255.4 919 28.8
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.8e-65 254.6 830 28.6
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.2e-63 249.2 453 35.5
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.7e-62 245.4 911 28.0
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.6e-60 238.8 1057 25.8
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 6.7e-59 233.4 411 35.8
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 3.4e-55 221.1 862 29.2
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 5.0e-54 217.2 384 37.0
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.1e-53 216.1 174 55.2
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-48 199.5 364 35.4
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 7.2e-45 186.8 568 28.0
Psat3g054600 Pisum sativum HOM05D006048 ORTHO05D007642 1.5e-39 169.1 141 63.1
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.4e-35 156.0 378 30.2
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.3e-35 155.2 379 30.9
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.0e-34 152.1 509 27.9
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 6.3e-33 147.1 717 27.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.0e-31 142.1 188 44.1
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 8.0e-28 130.2 277 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.3e-25 122.9 278 29.5
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.0e-23 115.5 315 31.4
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 2.0e-23 115.5 248 27.4
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 9.1e-16 90.1 75 54.7
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.7e-15 88.6 338 29.9
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 1.7e-14 85.9 338 29.6
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 5.5e-13 80.9 188 29.8
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.2e-09 68.9 108 41.7
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.7e-09 68.2 129 39.5
Psat4g159320 Pisum sativum HOM05D000515 ORTHO05D001911 1.8e-08 65.9 59 66.1
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.3e-06 58.9 227 28.6


User provided reference genes

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