Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 0.0e+00 1243.0 654 100.0
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 0.0e+00 1238.4 634 100.0
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 3.7e-240 835.1 627 72.4
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 4.0e-194 682.2 652 59.7
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 1.3e-184 650.6 659 57.1
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 4.0e-178 629.0 654 55.4
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 6.9e-178 628.2 658 56.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 4.8e-155 552.4 648 52.3
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.4e-146 524.2 664 50.0
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.9e-143 513.8 667 49.0
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.3e-125 453.8 353 72.2
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.3e-123 448.0 305 73.1
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 1.6e-97 361.3 709 37.1
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 3.5e-97 360.1 732 37.2
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.3e-95 353.2 714 36.8
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.6e-94 350.1 721 36.1
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.4e-93 348.2 723 35.5
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.8e-93 347.8 703 37.0
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.2e-93 346.3 724 35.6
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.2e-92 345.1 730 35.9
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 9.8e-92 342.0 708 36.7
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.2e-90 337.0 728 35.4
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 3.2e-90 337.0 728 35.3
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 4.1e-90 336.7 726 36.0
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 4.1e-90 336.7 713 36.6
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.7e-88 331.3 691 36.2
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.1e-87 328.6 717 35.7
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 4.3e-87 326.6 752 34.2
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 5.6e-87 326.2 718 36.6
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.6e-86 324.7 659 37.8
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 2.1e-86 324.3 677 37.1
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.8e-85 321.2 531 39.5
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 3.1e-85 320.5 756 34.4
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 3.4e-84 317.0 733 33.8
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.3e-83 315.1 721 35.1
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 3.7e-83 313.5 726 35.0
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 8.3e-83 312.4 730 34.9
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.4e-82 311.6 654 35.3
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 5.4e-82 309.7 630 36.3
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.5e-79 301.6 604 35.9
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.2e-78 298.5 796 32.2
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.6e-78 298.1 673 33.9
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 2.1e-78 297.7 675 35.9
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 3.6e-78 297.0 693 34.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 6.2e-78 296.2 692 35.7
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 8.1e-78 295.8 735 34.0
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 5.2e-77 293.1 677 35.2
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 6.8e-77 292.7 687 34.2
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 2.0e-76 291.2 725 32.1
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 2.0e-76 291.2 509 38.9
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 9.9e-76 288.9 654 35.6
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 4.9e-75 286.6 687 33.5
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 6.4e-75 286.2 608 35.9
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.1e-74 285.4 680 33.5
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.9e-74 284.6 454 39.6
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 3.2e-74 283.9 462 39.2
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 5.4e-74 283.1 559 37.2
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.2e-73 282.0 667 33.0
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 1.6e-73 281.6 607 35.7
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.6e-73 281.6 701 34.4
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.5e-73 280.4 645 33.5
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.0e-72 278.9 596 34.7
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.0e-72 278.9 542 36.0
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.7e-72 278.1 462 38.7
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.0e-72 277.3 543 37.0
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 5.1e-72 276.6 630 33.7
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 8.6e-72 275.8 647 33.8
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 8.6e-72 275.8 662 34.7
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.1e-71 275.4 609 36.0
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.5e-71 275.0 727 32.2
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 2.5e-71 274.2 514 36.6
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.1e-70 271.2 690 31.2
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 3.6e-70 270.4 651 34.9
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.7e-70 270.0 698 31.5
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.1e-69 268.9 470 40.2
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 1.1e-69 268.9 488 37.1
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.4e-69 267.7 648 33.0
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 6.8e-69 266.2 766 32.0
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 2.0e-68 264.6 696 32.9
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 4.4e-68 263.5 668 33.5
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 7.6e-68 262.7 241 64.3
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 7.8e-65 252.7 564 34.8
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 2.8e-62 244.2 689 32.2
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.8e-62 244.2 356 41.6
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.8e-61 241.5 373 40.5
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 5.8e-60 236.5 853 30.0
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 7.6e-60 236.1 415 38.6
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.8e-59 233.8 518 34.4
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 7.3e-55 219.5 543 33.5
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 1.3e-48 198.7 377 37.1
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.5e-47 195.3 265 45.7
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.8e-46 191.0 319 39.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 5.8e-44 183.3 470 33.0
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.6e-41 175.3 531 30.3
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.5e-41 174.1 512 30.3
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 8.7e-40 169.5 413 34.4
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 4.0e-37 160.6 542 27.7
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 1.0e-35 156.0 383 37.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 3.8e-35 154.1 379 33.5
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 6.5e-35 153.3 501 27.3
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 9.3e-34 149.4 332 36.1
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.0e-32 144.4 270 36.7
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 3.9e-32 144.1 234 38.9
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 6.7e-32 143.3 666 24.8
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 2.6e-28 131.3 270 37.0
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 1.3e-27 129.0 183 47.0
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 4.6e-25 120.6 315 31.4
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.0e-24 119.4 386 31.3
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.8e-21 108.6 348 34.2
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 4.5e-20 104.0 251 31.9
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.0e-19 102.8 139 48.2
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.4e-13 82.4 172 37.8
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 9.1e-13 79.7 109 45.0
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 2.6e-12 78.2 269 29.4
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 4.5e-12 77.4 124 41.1
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.9e-10 72.0 198 32.3
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 3.2e-10 71.2 76 53.9
TPR.G31594 Trifolium pratense HOM05D006063 ORTHO05D000023 4.2e-10 70.9 80 55.0


User provided reference genes

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