Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 0.0e+00 1162.9 608 100.0
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 7.8e-184 647.9 639 64.2
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 5.0e-175 618.6 744 55.1
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 8.2e-125 451.8 640 50.0
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.7e-117 427.6 933 39.4
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 4.1e-100 369.8 630 44.8
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 9.5e-81 305.4 661 39.2
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 2.1e-80 304.3 612 39.7
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 3.6e-80 303.5 619 39.6
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.6e-64 251.5 618 36.7
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 3.4e-54 217.2 549 36.6
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.2e-38 165.6 632 31.2
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 3.6e-32 144.1 636 28.3
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.1e-32 142.9 633 28.1
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 1.8e-31 141.7 121 62.8
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.6e-30 137.9 668 26.3
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 2.6e-30 137.9 582 27.3
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.1e-28 132.5 629 26.2
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.1e-28 132.5 645 27.1
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.4e-28 131.3 609 26.9
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 5.4e-28 130.2 641 26.2
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.7e-27 127.9 716 24.6
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 6.0e-27 126.7 643 26.3
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 5.6e-25 120.2 623 25.5
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.3e-24 119.0 720 24.2
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.8e-24 117.9 606 29.2
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.8e-24 117.1 611 27.5
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.1e-23 115.9 612 25.3
TPR.G478 Trifolium pratense HOM05D007504 ORTHO05D007629 1.1e-23 115.9 143 57.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 2.4e-23 114.8 611 25.0
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.2e-22 112.5 594 27.3
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.5e-22 112.1 602 26.2
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.6e-22 111.3 90 63.3
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.4e-22 110.9 605 26.3
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 5.8e-22 110.2 631 25.4
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 3.8e-21 107.5 671 24.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 6.4e-21 106.7 621 26.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 3.2e-20 104.4 607 25.4
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 4.2e-20 104.0 610 27.9
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 5.5e-20 103.6 605 25.0
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.1e-19 101.7 627 24.9
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.7e-19 101.3 491 26.5
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 1.8e-18 98.6 603 26.4
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 3.9e-18 97.4 687 25.5
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.5e-17 95.5 607 25.9
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.5e-17 95.5 606 26.1
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.5e-17 95.5 72 62.5
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 4.3e-17 94.0 132 43.2
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 4.3e-17 94.0 484 25.8
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.1e-16 91.7 479 25.5
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.8e-16 91.3 627 24.4
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 3.7e-16 90.9 603 23.2
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.2e-16 90.1 95 45.3
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 3.1e-15 87.8 455 25.3
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 3.1e-15 87.8 616 25.3
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 6.9e-15 86.7 118 43.2
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 6.9e-15 86.7 553 27.3
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 6.9e-15 86.7 194 36.1
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 2.6e-14 84.7 210 35.2
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.6e-14 84.7 93 45.2
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 5.8e-14 83.6 97 46.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 5.8e-14 83.6 97 46.4
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 5.8e-14 83.6 97 46.4
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-13 82.8 97 46.4
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.0e-13 82.8 287 30.0
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.3e-13 82.4 98 42.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.3e-13 82.4 143 36.4
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.7e-13 82.0 95 44.2
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.7e-13 82.0 71 54.9
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 2.9e-13 81.3 160 34.4
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.8e-13 80.9 150 34.7
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 6.5e-13 80.1 623 25.5
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 8.4e-13 79.7 557 27.3
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 8.4e-13 79.7 597 24.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 1.1e-12 79.3 75 48.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.4e-12 79.0 73 43.8
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 1.9e-12 78.6 94 43.6
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 5.5e-12 77.0 97 45.4
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 5.5e-12 77.0 196 31.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 5.5e-12 77.0 151 35.1
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 7.1e-12 76.6 130 36.2
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 7.1e-12 76.6 96 43.8
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.6e-11 75.5 177 34.5
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.1e-11 75.1 614 22.3
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 2.1e-11 75.1 65 52.3
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 4.6e-11 73.9 72 44.4
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.6e-11 73.9 72 44.4
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 6.1e-11 73.6 72 44.4
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.0e-10 72.8 240 28.8
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.0e-10 72.8 822 23.2
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.0e-10 72.8 610 24.1
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.3e-10 72.4 633 23.4
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 2.3e-10 71.6 98 39.8
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 2.3e-10 71.6 72 43.1
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 6.7e-10 70.1 668 22.6
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 6.7e-10 70.1 614 25.2
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 6.7e-10 70.1 598 22.9
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 8.7e-10 69.7 140 31.4
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 1.5e-09 68.9 735 22.0
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.5e-09 68.9 657 22.4
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.9e-09 68.6 597 24.8
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 4.3e-09 67.4 187 29.4
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 5.7e-09 67.0 182 32.4
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.6e-08 65.5 191 29.3
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.6e-08 65.5 350 26.6
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 3.7e-08 64.3 598 23.9
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.4e-07 62.4 242 27.3
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 2.4e-07 61.6 47 59.6
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.3e-07 60.5 70 42.9
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 5.3e-07 60.5 177 29.4
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 6.9e-07 60.1 597 24.3
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 6.9e-07 60.1 250 25.2
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 6.9e-07 60.1 75 38.7
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 2.6e-06 58.2 69 42.0
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.5e-06 57.4 76 38.2
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 5.9e-06 57.0 73 39.7
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.7e-06 56.6 66 45.5


User provided reference genes

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