Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.5e-220 768.5 383 100.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.5e-220 768.5 383 100.0
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.6e-80 302.0 235 67.2
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.6e-78 297.4 252 65.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-77 294.7 230 67.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.8e-77 293.9 235 66.8
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.3e-75 287.7 258 61.2
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.9e-75 286.6 236 65.3
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.4e-74 284.3 237 65.0
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 5.4e-74 282.3 234 66.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 7.8e-73 278.5 236 64.4
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 6.6e-72 275.4 235 63.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.6e-70 270.8 245 59.6
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.8e-70 270.0 235 63.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.7e-70 269.2 227 60.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.7e-70 269.2 227 60.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.2e-70 268.9 227 61.7
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-69 268.1 235 59.6
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.1e-69 268.1 235 59.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.4e-69 267.7 213 65.7
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.3e-69 266.9 235 62.1
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 8.9e-69 265.0 235 60.4
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.6e-68 263.5 235 59.1
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 5.8e-68 262.3 214 65.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.9e-68 261.5 235 58.7
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 9.9e-68 261.5 251 59.4
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.7e-67 260.8 235 60.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 8.4e-67 258.5 231 59.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.4e-66 256.9 234 59.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 4.1e-66 256.1 235 61.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 7.1e-66 255.4 237 59.9
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 2.7e-65 253.4 235 58.7
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 7.8e-65 251.9 231 59.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 1.0e-64 251.5 235 57.4
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.1e-64 249.2 216 60.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 8.6e-64 248.4 232 58.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 3.3e-63 246.5 229 55.5
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.6e-62 244.2 243 58.4
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 6.2e-62 242.3 237 54.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 6.2e-62 242.3 235 57.0
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 8.1e-62 241.9 227 59.9
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.8e-61 240.7 242 53.7
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.1e-61 240.0 230 57.4
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.2e-61 239.2 238 57.6
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.2e-60 238.0 235 56.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.5e-60 237.7 231 58.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.5e-60 237.7 231 56.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.6e-60 236.9 232 56.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.6e-60 236.9 236 53.8
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 3.4e-60 236.5 235 56.2
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.4e-60 236.5 221 57.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 5.8e-60 235.7 246 54.9
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 9.9e-60 235.0 231 53.2
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 9.9e-60 235.0 231 56.3
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 9.9e-60 235.0 247 52.6
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.3e-59 234.6 249 54.2
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.7e-59 234.2 237 53.6
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.9e-59 233.4 243 51.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 8.4e-59 231.9 231 52.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.4e-59 231.9 225 55.6
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.1e-58 231.5 241 56.0
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.1e-58 231.5 221 57.5
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 7.1e-58 228.8 230 52.2
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 7.1e-58 228.8 212 59.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.1e-57 227.3 234 54.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.6e-57 226.1 256 52.7
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.0e-56 223.4 209 55.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.0e-56 223.4 233 54.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.0e-56 223.4 220 55.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.1e-56 222.6 237 54.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 8.7e-56 221.9 236 54.7
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-55 221.5 251 51.0
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.5e-55 221.1 218 55.5
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.5e-55 220.3 232 52.2
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.5e-55 220.3 253 49.4
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.3e-55 219.9 249 51.0
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 5.6e-55 219.2 231 51.1
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 7.3e-55 218.8 254 49.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.6e-54 217.6 239 50.2
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-54 217.6 225 55.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.6e-54 217.6 213 58.2
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.8e-54 216.1 233 52.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 8.1e-54 215.3 242 49.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.8e-53 214.2 252 48.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.4e-53 213.8 240 49.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.0e-53 213.0 243 49.8
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 6.9e-53 212.2 218 52.8
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 9.0e-53 211.8 240 48.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 9.0e-53 211.8 240 48.8
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 9.0e-53 211.8 240 48.8
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.5e-52 211.1 252 46.8
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.3e-51 208.0 219 52.1
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 2.2e-51 207.2 215 50.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 9.3e-50 201.8 225 52.0
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.7e-49 200.3 235 47.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.0e-49 199.1 242 47.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.0e-48 198.4 213 51.2
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-48 197.6 218 51.4
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 8.7e-48 195.3 213 50.2
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.9e-47 194.1 214 50.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.5e-47 193.7 213 50.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 7.4e-47 192.2 216 48.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.8e-46 189.5 232 45.7
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.4e-44 183.3 206 53.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 5.8e-44 182.6 236 44.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.3e-43 181.4 248 41.9
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.8e-43 179.9 238 40.8
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.4e-43 179.1 170 53.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.4e-42 177.2 225 42.2
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 9.3e-42 175.3 216 48.1
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.7e-41 173.7 187 52.4
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.3e-40 171.4 214 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.5e-39 167.9 243 39.1
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.3e-39 166.8 258 41.9
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.4e-36 156.8 231 41.1
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.4e-35 152.1 166 50.6
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.9e-33 145.6 190 41.6
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 8.7e-32 142.1 189 43.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.8e-30 137.1 114 60.5
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.0e-29 132.1 125 60.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.0e-27 128.6 177 44.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 5.0e-27 126.3 112 56.2
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-26 125.2 93 71.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.9e-26 124.4 125 56.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-25 121.7 178 42.1
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.8e-24 117.9 108 53.7
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 3.0e-24 117.1 114 53.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.1e-23 115.2 140 50.0
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.7e-22 110.2 168 42.9
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 6.3e-22 109.4 182 40.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 6.3e-22 109.4 122 50.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-21 106.3 146 40.4
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-20 105.1 94 61.7
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 3.4e-20 103.6 209 32.5
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.5e-20 103.2 69 71.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.5e-20 103.2 140 39.3
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 7.7e-20 102.4 77 68.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.9e-19 100.5 246 28.5
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 4.6e-17 93.2 156 38.5
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 6.9e-13 79.3 173 27.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-12 78.6 53 77.4
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 4.5e-12 76.6 60 60.0
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.7e-09 67.4 68 52.9


User provided reference genes

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