Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 0.0e+00 1283.9 671 100.0
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 3.2e-255 885.2 654 76.3
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 5.8e-249 864.4 663 74.7
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 8.2e-235 817.4 664 71.7
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 9.1e-210 734.2 703 62.4
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 1.2e-209 733.8 688 62.5
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 9.7e-204 714.1 694 62.1
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 3.4e-196 689.1 698 60.0
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 5.2e-189 665.2 693 57.7
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.0e-185 653.3 699 56.2
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 1.2e-174 617.5 694 56.2
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 7.1e-154 548.5 698 52.3
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.7e-102 377.9 710 41.7
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 2.2e-102 377.5 710 41.5
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 1.7e-94 351.3 725 38.9
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 8.2e-94 349.0 715 38.3
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 5.3e-93 346.3 703 40.5
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 4.0e-88 330.1 668 38.8
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 4.4e-87 326.6 664 38.9
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 4.5e-84 316.6 665 38.5
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 5.0e-83 313.2 679 37.6
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 2.0e-79 301.2 709 36.4
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 1.3e-78 298.5 691 36.6
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 4.8e-78 296.6 723 37.2
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.3e-78 295.8 710 36.1
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.3e-78 295.8 710 36.1
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.4e-77 294.3 704 35.7
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.3e-74 283.9 664 36.6
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 2.3e-72 277.7 722 36.7
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.6e-71 274.2 730 35.5
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 5.7e-71 273.1 706 33.9
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 7.5e-71 272.7 695 35.0
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 9.8e-71 272.3 710 35.5
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 5.4e-69 266.5 713 35.2
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 2.7e-68 264.2 700 34.7
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 2.5e-66 257.7 718 34.7
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 1.2e-65 255.4 698 33.4
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 6.8e-64 249.6 706 35.7
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 8.9e-64 249.2 652 35.3
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 1.5e-63 248.4 649 33.3
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 3.4e-63 247.3 671 34.7
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 2.2e-62 244.6 704 33.2
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 2.9e-62 244.2 712 33.4
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 4.9e-62 243.4 664 34.5
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 3.2e-61 240.7 647 33.2
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 6.0e-60 236.5 650 34.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 6.8e-56 223.0 476 37.2
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 7.5e-55 219.5 449 38.5
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 3.7e-54 217.2 657 32.9
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 4.9e-54 216.9 649 33.4
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 2.4e-53 214.5 380 42.6
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 2.7e-52 211.1 675 33.5
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 6.0e-52 209.9 722 31.6
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 6.6e-51 206.5 449 37.9
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.1e-50 205.7 633 32.2
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 3.3e-50 204.1 701 33.1
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 3.3e-50 204.1 689 31.8
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 3.6e-49 200.7 687 31.6
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 4.0e-48 197.2 571 32.9
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 3.7e-46 190.7 469 33.7
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 3.7e-46 190.7 701 30.7
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.0e-43 182.6 716 31.0
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.7e-43 181.8 661 31.9
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 1.1e-40 172.6 649 29.7
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 1.4e-40 172.2 680 30.0
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 5.2e-40 170.2 620 32.1
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 6.8e-40 169.9 717 30.1
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 2.6e-39 167.9 501 33.1
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 8.4e-38 162.9 706 28.8
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 8.4e-38 162.9 553 31.3
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 1.1e-37 162.5 715 29.7
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 1.1e-37 162.5 672 29.3
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 2.7e-36 157.9 701 29.1
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 6.0e-36 156.8 574 31.0
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 1.0e-35 156.0 462 35.1
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.0e-35 156.0 646 30.0
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.0e-35 156.0 678 29.6
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 1.7e-35 155.2 655 28.5
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.9e-34 151.8 578 29.9
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 2.1e-33 148.3 684 28.7
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 3.6e-33 147.5 559 31.1
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 1.8e-32 145.2 513 30.6
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 2.2e-30 138.3 669 28.8
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 4.9e-30 137.1 709 29.2
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 7.1e-29 133.3 656 27.9
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 3.5e-28 131.0 524 30.0
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.1e-26 125.9 477 28.7
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 5.6e-26 123.6 612 27.5
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 2.1e-25 121.7 285 36.1
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.1e-24 119.4 694 30.0
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 4.5e-23 114.0 606 26.1
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 7.6e-23 113.2 445 29.7
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 2.3e-19 101.7 360 33.1
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 5.1e-19 100.5 561 28.5
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 8.7e-19 99.8 463 29.8
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 8.7e-19 99.8 682 26.5
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 3.3e-18 97.8 645 25.3
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 4.3e-18 97.4 445 29.4
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 5.5e-13 80.5 482 25.3
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 1.2e-12 79.3 375 26.4
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 4.6e-12 77.4 319 27.9
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 1.0e-11 76.3 512 24.4
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 1.9e-10 72.0 229 31.0
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 2.5e-10 71.6 416 25.5
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 3.7e-09 67.8 379 23.7
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 1.1e-08 66.2 392 25.0
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 2.0e-07 62.0 239 28.0


User provided reference genes

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