Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 9.0e-77 290.4 174 100.0
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 8.2e-46 187.6 154 76.0
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 8.5e-43 177.6 157 66.2
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 8.5e-43 177.6 157 66.2
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.7e-36 156.0 138 68.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.3e-35 153.7 154 62.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 5.0e-35 151.8 176 62.5
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 8.5e-35 151.0 154 68.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.6e-33 146.7 155 60.6
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.4e-31 139.0 166 54.2
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 5.7e-31 138.3 176 52.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.8e-31 137.5 153 62.1
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 3.7e-30 135.6 157 59.2
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.8e-30 135.2 154 52.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.0e-29 131.3 160 58.8
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.2e-28 130.6 152 58.6
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 5.9e-28 128.3 160 58.1
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 2.3e-27 126.3 162 56.2
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.9e-27 125.9 154 48.1
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.3e-26 122.5 174 54.0
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.6e-25 120.2 154 61.0
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 8.0e-25 117.9 177 53.1
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-22 110.2 186 51.1
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.6e-20 103.6 150 54.7
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.6e-20 103.6 147 42.9
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 7.8e-20 101.3 176 43.8
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.3e-19 100.5 155 45.8
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.7e-19 100.1 139 48.9
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.7e-19 100.1 174 51.7
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.3e-19 99.8 147 41.5
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 5.0e-19 98.6 148 41.2
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 8.6e-19 97.8 163 52.8
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-18 95.9 154 51.9
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.3e-18 95.5 156 41.7
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 7.3e-18 94.7 151 50.3
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 9.5e-18 94.4 168 44.6
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.2e-17 94.0 147 51.0
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 2.1e-17 93.2 128 50.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.1e-17 93.2 152 57.9
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.8e-17 92.8 143 39.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.6e-17 92.4 160 46.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.6e-17 92.4 152 49.3
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 6.1e-17 91.7 156 34.6
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.0e-17 91.3 155 51.6
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.0e-17 91.3 155 51.0
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.8e-16 90.1 113 61.9
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.3e-16 89.7 130 49.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.3e-16 89.7 151 49.7
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 4.0e-16 89.0 154 46.8
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 4.0e-16 89.0 156 50.6
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.2e-16 88.6 145 40.7
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 5.2e-16 88.6 129 58.1
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.5e-15 87.0 178 45.5
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-15 87.0 113 51.3
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.5e-15 87.0 148 49.3
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.0e-15 86.7 52 61.5
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 2.6e-15 86.3 113 54.0
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.4e-15 85.9 174 47.1
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 3.4e-15 85.9 49 63.3
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 4.4e-15 85.5 148 41.9
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.4e-15 85.5 172 43.0
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 5.8e-15 85.1 153 52.3
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 7.5e-15 84.7 155 47.7
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 7.5e-15 84.7 51 58.8
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 7.5e-15 84.7 52 59.6
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 9.8e-15 84.3 160 45.6
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.3e-14 84.0 150 45.3
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.2e-14 83.2 50 56.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.2e-14 83.2 50 56.0
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.2e-14 83.2 50 56.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.2e-14 83.2 50 56.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.2e-14 83.2 50 56.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.2e-14 83.2 152 47.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.2e-14 83.2 148 36.5
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.9e-14 82.8 117 48.7
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.9e-14 82.8 110 51.8
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 3.7e-14 82.4 149 42.3
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.7e-14 82.4 150 49.3
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.7e-14 82.4 49 59.2
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.7e-14 82.4 123 52.0
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 4.9e-14 82.0 50 54.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 4.9e-14 82.0 50 54.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 4.9e-14 82.0 50 54.0
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.9e-14 82.0 50 54.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.9e-14 82.0 165 39.4
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.9e-14 82.0 50 60.0
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 4.9e-14 82.0 52 59.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.9e-14 82.0 50 56.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.4e-14 81.6 50 54.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.4e-14 81.6 50 54.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 6.4e-14 81.6 50 54.0
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.4e-14 81.6 52 59.6
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.4e-14 81.6 148 52.0
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.3e-14 81.3 127 55.9
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.3e-14 81.3 127 55.9
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.3e-14 81.3 127 55.9
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 8.3e-14 81.3 143 35.7
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.1e-13 80.9 50 56.0
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.1e-13 80.9 52 55.8
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.4e-13 80.5 167 41.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.4e-13 80.5 148 50.7
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-13 80.5 52 59.6
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-13 80.5 52 59.6
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-13 80.5 52 57.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.4e-13 80.5 127 51.2
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.4e-13 79.7 151 29.8
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-13 79.3 50 56.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 7.0e-13 78.2 48 60.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 9.2e-13 77.8 153 37.3
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 9.2e-13 77.8 48 58.3
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 9.2e-13 77.8 52 50.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.2e-12 77.4 119 53.8
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-12 77.4 159 50.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.2e-12 77.4 155 39.4
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.2e-12 77.4 154 46.1
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.6e-12 77.0 50 58.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-12 76.3 50 46.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-12 76.3 50 46.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.7e-12 76.3 50 46.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.7e-12 76.3 50 46.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.7e-12 76.3 171 44.4
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.7e-12 76.3 48 60.4
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 3.5e-12 75.9 48 60.4
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 7.8e-12 74.7 52 46.2
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.3e-11 73.9 139 48.2
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-11 73.6 48 56.2
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.7e-11 73.6 50 50.0
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-11 73.2 130 48.5
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.3e-11 73.2 48 56.2
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.0e-11 72.8 124 51.6
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.0e-11 72.8 54 48.1
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 3.9e-11 72.4 129 41.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 6.6e-11 71.6 52 50.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 8.6e-11 71.2 156 38.5
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-10 70.9 136 48.5
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-10 70.9 50 50.0
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-10 70.9 50 50.0
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.5e-10 70.5 51 52.9
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.9e-10 70.1 49 51.0
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.3e-10 68.9 169 29.0
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 5.6e-10 68.6 51 47.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.3e-10 68.2 131 47.3
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 7.3e-10 68.2 146 37.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 7.3e-10 68.2 51 45.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.3e-10 68.2 51 45.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.6e-09 67.0 46 54.3
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.7e-09 65.5 51 45.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.1e-08 64.3 47 48.9
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 2.3e-08 63.2 44 47.7
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 4.0e-08 62.4 112 49.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.2e-08 62.0 51 45.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.5e-07 60.5 51 39.2
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 9.8e-07 57.8 43 53.5
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 8.3e-06 54.7 112 38.4


User provided reference genes

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