Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.0e-260 902.9 468 100.0
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 4.4e-243 844.3 471 93.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.3e-236 822.0 468 89.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 4.8e-226 787.7 470 88.1
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.8e-225 785.8 470 88.7
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.9e-224 780.8 468 87.6
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.7e-223 779.2 474 86.1
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.7e-221 771.9 470 86.2
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-213 746.5 472 83.7
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.4e-209 733.0 441 87.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.9e-202 708.8 422 89.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.6e-200 703.0 470 78.1
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.5e-200 701.8 456 81.6
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 7.3e-198 694.1 456 80.9
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 9.5e-198 693.7 471 77.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.8e-197 692.2 470 77.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 3.6e-197 691.8 441 81.9
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.6e-197 691.8 468 76.7
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.4e-196 689.9 472 77.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.8e-196 689.5 471 77.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.0e-196 688.3 470 77.0
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.2e-196 688.0 441 81.0
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 6.8e-196 687.6 472 77.3
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 8.9e-196 687.2 471 78.1
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.0e-195 686.0 482 76.1
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.6e-195 685.6 469 76.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 9.8e-195 683.7 441 81.2
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 4.9e-194 681.4 448 80.4
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 6.4e-194 681.0 471 75.2
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 6.4e-194 681.0 468 76.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 5.4e-193 677.9 470 76.4
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 7.0e-193 677.6 449 78.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 7.0e-193 677.6 465 76.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 4.6e-192 674.9 441 78.7
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 6.0e-192 674.5 470 76.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 7.8e-192 674.1 470 77.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.0e-191 673.7 475 76.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.0e-191 673.7 470 76.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.1e-190 670.2 445 78.7
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.5e-190 669.8 447 78.1
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.5e-190 669.1 470 76.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.5e-190 669.1 471 75.4
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.5e-190 669.1 470 74.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 5.6e-190 667.9 454 78.4
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 9.5e-190 667.2 443 78.3
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 9.5e-190 667.2 449 77.5
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 4.7e-189 664.8 423 84.4
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 4.7e-189 664.8 441 78.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 4.7e-189 664.8 441 78.9
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.1e-188 663.7 471 75.2
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.8e-188 662.9 441 78.7
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.3e-188 662.5 469 74.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 4.0e-188 661.8 448 77.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 6.8e-188 661.0 440 77.7
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.2e-187 660.2 434 78.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.7e-186 656.4 434 78.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.7e-186 656.4 509 71.7
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.9e-186 655.6 463 74.1
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.7e-186 655.2 472 73.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 8.3e-186 654.1 472 73.7
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.1e-185 653.7 467 74.9
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.2e-185 652.1 474 73.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.2e-185 652.1 472 73.3
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.1e-185 651.7 427 78.7
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.6e-184 649.8 475 72.8
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.7e-184 649.0 446 75.8
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.5e-184 648.7 475 72.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 7.8e-184 647.5 469 72.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.0e-183 647.1 475 72.2
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.0e-183 647.1 475 72.4
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.7e-183 646.4 441 75.3
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.7e-183 646.4 469 73.3
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.1e-183 644.8 475 72.2
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 8.6e-183 644.0 470 72.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.5e-182 643.3 469 73.1
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.5e-182 642.5 468 73.1
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.3e-182 641.7 441 75.7
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 7.3e-182 641.0 461 72.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 7.3e-182 641.0 453 74.4
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.6e-181 638.6 449 75.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-180 637.1 450 74.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.4e-180 636.7 453 75.1
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.4e-180 636.7 473 72.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.0e-180 635.2 423 76.8
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.2e-179 633.6 469 72.3
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 2.0e-179 632.9 456 74.6
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.7e-178 629.8 450 72.9
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 6.4e-178 627.9 495 69.3
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.2e-177 625.5 478 70.3
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.6e-176 623.2 399 82.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 7.8e-176 620.9 409 79.5
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 5.1e-175 618.2 466 71.7
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 7.3e-174 614.4 426 76.1
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 8.1e-173 610.9 406 78.3
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 5.3e-172 608.2 464 68.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.4e-171 605.1 546 63.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.2e-169 599.0 413 78.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.6e-168 596.7 422 72.3
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.2e-163 580.5 424 71.0
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-163 580.5 412 75.7
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.2e-155 553.9 409 72.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.0e-155 553.1 423 69.3
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 7.6e-155 551.2 471 63.3
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.1e-153 544.7 405 74.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 3.0e-151 539.3 385 70.6
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 5.1e-143 511.9 325 83.7
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-138 497.3 345 78.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.6e-136 489.2 478 60.7
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.1e-134 484.2 451 58.8
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 5.9e-131 471.9 360 69.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 3.2e-129 466.1 432 62.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 4.1e-124 449.1 437 58.8
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.3e-122 444.1 329 69.3
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.9e-119 432.6 434 56.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.0e-106 389.0 253 82.2
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 8.8e-103 378.3 388 57.0
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.0e-82 310.1 241 71.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.5e-81 307.0 218 75.7
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.4e-77 292.4 202 76.2
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.6e-75 287.7 195 76.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.7e-69 267.7 147 89.8
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-68 265.0 204 69.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.9e-66 256.5 218 61.5
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.7e-61 241.1 182 75.8
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.0e-50 203.8 498 34.9
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.0e-46 191.0 124 75.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.5e-36 157.5 140 65.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.2e-36 156.8 137 65.7
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.8e-31 141.4 102 71.6
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 9.0e-31 139.0 141 58.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.5e-30 138.3 264 39.4
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.3e-29 135.2 158 55.7
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.9e-28 131.3 101 69.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 9.3e-28 129.0 264 37.5
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.6e-27 126.7 147 51.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 4.3e-25 120.2 109 61.5
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 6.7e-18 96.3 121 52.1
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.8e-16 90.9 87 55.2
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-13 82.4 76 59.2
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 5.0e-13 80.1 63 66.7
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.1e-12 79.0 45 82.2
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.9e-12 78.2 74 52.7
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.5e-12 77.8 74 52.7
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 4.2e-12 77.0 130 43.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 7.2e-12 76.3 80 55.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 9.4e-12 75.9 103 47.6
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 9.4e-12 75.9 103 47.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 9.4e-12 75.9 64 62.5
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-11 75.5 130 42.3
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-11 75.5 130 42.3
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-11 75.5 63 63.5
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-11 75.5 130 42.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.2e-11 75.5 89 52.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-11 75.1 130 42.3
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-11 75.1 158 38.0
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.6e-11 75.1 64 62.5
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 4.7e-11 73.6 59 54.2
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.3e-10 71.2 165 33.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 8.8e-10 69.3 177 31.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.1e-09 68.9 76 50.0
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.6e-09 67.8 132 40.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 8.2e-08 62.8 47 70.2
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-07 60.5 48 68.8
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 7.0e-07 59.7 45 66.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.6e-06 58.5 39 71.8


User provided reference genes

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