Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 2.1e-126 455.7 228 100.0
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.3e-80 302.8 227 68.7
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 7.2e-74 281.2 229 67.2
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 8.2e-70 267.7 225 65.8
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 3.4e-68 262.3 222 65.3
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 2.7e-65 252.7 224 62.1
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 2.7e-65 252.7 224 62.1
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 9.7e-55 217.6 224 56.7
Medtr8g080260 Medicago truncatula HOM05D004670 ORTHO05D014137 2.4e-37 159.8 138 63.0
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 3.4e-23 112.8 190 41.6
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 5.8e-23 112.1 169 43.8
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 2.9e-22 109.8 174 40.8
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.5e-18 96.7 172 38.4
Medtr1g102610 Medicago truncatula HOM05D004670 ORTHO05D014137 8.1e-17 91.7 82 58.5
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.4e-16 90.9 150 40.7
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 2.3e-16 90.1 149 40.9
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 4.0e-16 89.4 99 52.5
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 5.2e-16 89.0 146 39.7
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 5.2e-16 89.0 145 41.4
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 5.2e-16 89.0 155 39.4
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 9.8e-15 84.7 147 40.8
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 3.7e-14 82.8 157 40.1
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 6.4e-14 82.0 152 36.2
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.4e-13 80.9 145 39.3
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.9e-13 80.5 152 33.6
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 2.4e-13 80.1 153 34.0
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 9.2e-13 78.2 54 68.5
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.1e-12 77.0 144 38.2
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.7e-12 76.6 143 39.2
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 6.0e-12 75.5 148 36.5
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 7.8e-12 75.1 146 37.0
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.0e-11 74.7 145 37.9
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.3e-11 73.6 142 38.0
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 3.0e-11 73.2 144 36.1
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 3.0e-11 73.2 144 36.8
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 3.9e-11 72.8 154 33.1
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 3.9e-11 72.8 144 35.4
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 3.9e-11 72.8 142 38.0
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 3.9e-11 72.8 141 36.9
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 6.6e-11 72.0 145 37.2
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 6.6e-11 72.0 144 36.1
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.1e-10 71.2 173 32.4
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.9e-10 70.5 143 35.0
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.9e-10 70.5 144 37.5
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 2.5e-10 70.1 149 32.9
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 2.5e-10 70.1 148 35.8
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 3.3e-10 69.7 141 36.9
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.3e-10 69.7 142 37.3
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 4.3e-10 69.3 141 35.5
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 7.3e-10 68.6 146 36.3
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.5e-10 68.2 144 35.4
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.5e-10 68.2 144 35.4
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 9.5e-10 68.2 173 31.8
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.2e-09 67.8 144 34.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.2e-09 67.8 143 35.0
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.6e-09 67.4 135 34.8
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.1e-09 67.0 151 33.8
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 2.8e-09 66.6 149 34.9
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 3.6e-09 66.2 145 38.6
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 3.6e-09 66.2 171 30.4
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 8.1e-09 65.1 140 30.7
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.1e-08 64.7 135 34.1
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.1e-08 64.7 172 30.2
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.4e-08 64.3 172 30.2
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.8e-08 63.9 143 35.7
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.8e-08 63.9 149 34.2
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 3.1e-08 63.2 144 34.0
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.0e-08 62.8 165 31.5
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 5.2e-08 62.4 161 32.9
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 8.9e-08 61.6 145 32.4
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 8.9e-08 61.6 137 32.1
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 8.9e-08 61.6 172 29.7
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.2e-07 61.2 137 32.1
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.2e-07 61.2 132 34.8
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.0e-07 60.5 149 33.6
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 2.6e-07 60.1 172 29.1
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 2.6e-07 60.1 142 30.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 2.6e-07 60.1 142 30.3
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 5.8e-07 58.9 140 29.3
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-06 57.0 98 41.8
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.4e-06 55.5 148 32.4
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 8.4e-06 55.1 130 29.2
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 8.4e-06 55.1 130 29.2


User provided reference genes

Program Settings