Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09586_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 2.2e-131 472.2 227 100.0
Ca_25879_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 6.8e-117 424.1 221 92.3
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 6.0e-105 384.4 223 84.3
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 3.9e-104 381.7 224 83.9
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 3.6e-94 348.6 218 77.5
Phvul.005G033500 Phaseolus vulgaris HOM05D005973 ORTHO05D007285 2.7e-89 332.4 224 75.4
VMungo1080G0196 Vigna mungo HOM05D005973 ORTHO05D007285 2.7e-89 332.4 226 75.7
Glyma.20G097200 Glycine max HOM05D005973 ORTHO05D007285 3.0e-88 328.9 219 74.9
Lalb_Chr25g0282721 Lupinus albus HOM05D005973 ORTHO05D007285 3.0e-88 328.9 220 75.0
Glyma.06G236700 Glycine max HOM05D005973 ORTHO05D007285 3.3e-87 325.5 218 74.3
TPR.G2735 Trifolium pratense HOM05D005973 ORTHO05D007285 4.3e-87 325.1 195 83.6
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 5.3e-85 318.2 217 74.2
arahy.Tifrunner.gnm1.ann1.P50PF0 Arachis hypogaea HOM05D005973 ORTHO05D007285 6.9e-85 317.8 217 74.2
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 2.5e-79 299.3 225 67.1
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 1.3e-78 297.0 227 65.6
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 2.1e-78 296.2 229 68.1
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 3.7e-78 295.4 231 67.5
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 1.1e-77 293.9 231 66.7
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 1.8e-77 293.1 217 68.2
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 4.0e-77 292.0 228 66.7
Gorai.010G192200 Gossypium raimondii HOM05D005973 ORTHO05D007285 6.9e-77 291.2 217 67.7
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 1.2e-76 290.4 216 69.0
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.2e-76 290.4 221 68.3
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 5.8e-76 288.1 224 66.5
Gohir.D06G164800 Gossypium hirsutum HOM05D005973 ORTHO05D007285 1.0e-75 287.3 217 67.3
Potri.003G203100 Populus trichocarpa HOM05D005973 ORTHO05D007285 1.3e-75 287.0 214 69.2
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.7e-75 286.6 224 66.5
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 6.5e-75 284.6 223 65.9
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 4.2e-74 282.0 227 65.6
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.2e-74 282.0 224 65.6
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 5.5e-74 281.6 222 65.8
Sed0021022 Sechium edule HOM05D005973 ORTHO05D007285 5.5e-74 281.6 236 64.8
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 7.1e-74 281.2 224 63.8
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 1.0e-72 277.3 214 67.3
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 1.3e-72 276.9 222 64.9
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.8e-72 276.6 224 64.3
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 5.1e-72 275.0 217 65.0
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 5.1e-72 275.0 225 64.4
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 6.7e-72 274.6 227 63.4
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 8.7e-72 274.2 224 63.8
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 1.9e-71 273.1 238 61.3
CsaV3_5G024580 Cucumis sativus L. HOM05D005973 ORTHO05D007285 1.9e-71 273.1 226 64.2
Lsat_1_v5_gn_1_100901 Lactuca sativa HOM05D005973 ORTHO05D007285 1.9e-71 273.1 225 63.6
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 1.9e-71 273.1 227 63.0
MELO3C005140.2 Cucumis melo HOM05D005973 ORTHO05D007285 3.3e-71 272.3 226 64.2
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 3.3e-71 272.3 223 64.1
Thhalv10024515m.g Eutrema salsugineum HOM05D005973 ORTHO05D007285 3.3e-71 272.3 229 62.0
Carub.0007s2070 Capsella rubella HOM05D005973 ORTHO05D007285 7.4e-71 271.2 231 62.3
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 2.1e-70 269.6 226 61.5
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 2.1e-70 269.6 221 64.7
CSS0008088 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 2.8e-70 269.2 230 61.7
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 3.7e-70 268.9 227 60.8
THA.LOC104812083 Tarenaya hassleriana HOM05D005973 ORTHO05D007285 4.8e-70 268.5 225 62.2
CSS0029678 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 6.2e-70 268.1 230 61.7
BraA01t01158Z Brassica rapa HOM05D005973 ORTHO05D007285 8.2e-70 267.7 224 62.5
AL7G33400 Arabidopsis lyrata HOM05D005973 ORTHO05D007285 1.1e-69 267.3 231 61.0
A01p12160 Brassica napus HOM05D005973 ORTHO05D007285 1.4e-69 266.9 220 62.3
AT4G20740 Arabidopsis thaliana HOM05D005973 ORTHO05D007285 1.8e-69 266.5 231 60.6
CARHR227290 Cardamine hirsuta HOM05D005973 ORTHO05D007285 2.4e-69 266.2 225 62.2
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 2.4e-69 266.2 221 64.3
C01p14480 Brassica napus HOM05D005973 ORTHO05D007285 6.9e-69 264.6 225 62.2
BolC1t01403H Brassica oleracea HOM05D005973 ORTHO05D007285 6.9e-69 264.6 225 62.2
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 6.9e-69 264.6 226 62.4
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 1.2e-68 263.8 222 62.6
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 1.2e-68 263.8 231 61.0
Aa31LG6G2840 Aethionema arabicum HOM05D005973 ORTHO05D007285 7.6e-68 261.2 227 61.7
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.3e-67 260.4 231 60.6
BcaC09g51316 Brassica carinata HOM05D005973 ORTHO05D007285 2.2e-67 259.6 225 61.3
Migut.N01822 Erythranthe guttata HOM05D005973 ORTHO05D007285 8.4e-67 257.7 223 60.1
BcaNung04156 Brassica carinata HOM05D005973 ORTHO05D007285 1.1e-66 257.3 226 61.5
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 1.6e-65 253.4 219 61.6
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 2.1e-65 253.1 222 61.3
CAN.G410.36 Capsicum annuum HOM05D005973 ORTHO05D007285 2.7e-65 252.7 215 60.5
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.0e-64 250.8 225 59.6
FAN03G2603 Fragaria x ananassa HOM05D005973 ORTHO05D007285 3.9e-64 248.8 219 60.7
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 5.1e-64 248.4 225 59.6
Sopen01g030120 Solanum pennellii HOM05D005973 ORTHO05D007285 5.1e-64 248.4 228 58.3
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 1.1e-63 247.3 217 58.1
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 1.5e-63 246.9 219 59.8
Oeu027349.1 Olea europaea HOM05D005973 ORTHO05D007285 1.9e-63 246.5 228 59.2
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 1.9e-63 246.5 219 59.8
PGSC0003DMG400006820 Solanum tuberosum HOM05D005973 ORTHO05D007285 1.9e-63 246.5 219 59.4
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 2.5e-63 246.1 219 60.3
SalBow6G5404 Salvia bowleyana HOM05D005973 ORTHO05D007285 2.5e-63 246.1 224 59.4
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 4.3e-63 245.4 218 57.3
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.3e-63 245.4 224 56.2
MSTRG.27162 Avicennia marina HOM05D005973 ORTHO05D007285 2.8e-62 242.7 230 58.3
Hma1.2p1_0579F.1_g182720 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 1.7e-59 233.4 203 62.6
Nn3g17082 Nelumbo nucifera HOM05D005973 ORTHO05D007285 3.2e-58 229.2 237 57.8
SGA_v2.0_scaffold354G49737 Striga asiatica HOM05D005973 ORTHO05D007285 4.6e-57 225.3 251 53.0
HPP92_000751 Vanilla planifolia HOM05D005973 ORTHO05D007285 4.6e-57 225.3 237 53.6
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 7.9e-57 224.6 216 56.9
Ah.10g030910 Amaranthus hybridus HOM05D005973 ORTHO05D007285 1.0e-56 224.2 213 56.8
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 1.1e-55 220.7 165 66.7
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 4.1e-53 212.2 221 49.3
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 6.5e-51 204.9 222 49.5
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 4.1e-45 185.7 216 46.8
SHI03959 Sapria himalayana HOM05D005973 ORTHO05D007285 1.3e-43 180.6 209 48.3
Zm00001eb301300 Zea mays HOM05D005973 ORTHO05D007285 5.3e-37 158.7 231 41.1
Actinidia21529 Actinidia chinensis HOM05D005973 ORTHO05D007285 7.2e-34 148.3 161 50.9
Os07g0179000 Oryza sativa ssp. japonica HOM05D005973 ORTHO05D007285 2.1e-33 146.7 215 41.9
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 8.6e-19 98.2 45 100.0
FAN10G2343 Fragaria x ananassa HOM05D005973 ORTHO05D007285 2.9e-14 83.2 49 77.6
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 1.4e-13 80.9 45 82.2
Eucgr.C02304 Eucalyptus grandis HOM05D005973 ORTHO05D007285 3.2e-13 79.7 45 82.2
Eucgr.J01726 Eucalyptus grandis HOM05D005973 ORTHO05D007285 3.2e-13 79.7 45 82.2
MD02G1297100 Malus domestica HOM05D005973 ORTHO05D007285 5.4e-13 79.0 45 82.2
VMungo0647G0908 Vigna mungo HOM05D005973 ORTHO05D019759 2.8e-09 66.6 111 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.6e-09 66.2 120 30.8
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 4.0e-08 62.8 45 66.7
Lj2g0000352 Lotus japonicus HOM05D000424 ORTHO05D000355 1.5e-07 60.8 106 37.7
Lj5g0007824 Lotus japonicus HOM05D000424 ORTHO05D000355 1.5e-07 60.8 106 37.7
FAN12G3308 Fragaria x ananassa HOM05D000424 ORTHO05D000355 5.8e-07 58.9 109 36.7
Glyma.20G115000 Glycine max HOM05D005973 ORTHO05D007285 4.9e-06 55.8 27 85.2
Glyma.17G084400 Glycine max HOM05D002460 ORTHO05D002716 8.3e-06 55.1 66 45.5
VMungo0647G2034 Vigna mungo HOM05D005973 ORTHO05D007285 8.3e-06 55.1 37 75.7


User provided reference genes

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