Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 1.8e-27 125.2 64 100.0
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 3.8e-25 117.5 64 90.6
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 3.8e-25 117.5 64 90.6
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 2.5e-24 114.8 64 87.5
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 4.3e-24 114.0 64 87.5
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 3.0e-22 107.8 63 82.5
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 5.2e-22 107.1 64 82.8
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 5.2e-22 107.1 64 82.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.5e-21 105.5 63 79.4
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 3.4e-21 104.4 64 81.2
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 3.4e-21 104.4 64 81.2
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 5.7e-21 103.6 61 82.0
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 7.5e-21 103.2 60 81.7
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 7.5e-21 103.2 64 76.6
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 9.8e-21 102.8 63 79.4
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.3e-20 102.4 63 79.4
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.3e-20 102.4 63 77.8
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.7e-20 102.1 63 77.8
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 2.2e-20 101.7 63 79.4
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 77.8
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 76.2
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 4.9e-20 100.5 64 76.6
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 4.9e-20 100.5 64 78.1
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 76.2
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 76.2
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 6.4e-20 100.1 64 76.6
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 6.4e-20 100.1 64 76.6
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 8.3e-20 99.8 63 76.2
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.1e-19 99.4 64 76.6
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 74.6
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 1.8e-19 98.6 63 76.2
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.4e-19 98.2 64 73.4
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 3.2e-19 97.8 63 74.6
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 3.2e-19 97.8 63 73.0
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 3.2e-19 97.8 60 80.0
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 3.2e-19 97.8 63 74.6
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 4.1e-19 97.4 64 73.4
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 74.6
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.0e-19 96.7 63 73.0
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.0e-19 96.7 63 73.0
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.0e-19 96.7 63 73.0
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 9.2e-19 96.3 63 73.0
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.2e-18 95.9 63 73.0
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 1.2e-18 95.9 64 75.0
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 1.6e-18 95.5 61 75.4
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 74.6
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 74.6
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 1.6e-18 95.5 64 75.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 3.5e-18 94.4 64 71.9
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 3.5e-18 94.4 62 71.0
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 4.6e-18 94.0 57 75.4
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 69.8
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 5.9e-18 93.6 63 71.4
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 7.8e-18 93.2 62 69.4
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 1.3e-17 92.4 52 84.6
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.3e-17 92.4 56 78.6
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.3e-17 92.4 63 73.0
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.3e-17 92.4 63 71.4
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 3.9e-17 90.9 62 69.4
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 5.0e-17 90.5 63 71.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 8.6e-17 89.7 63 68.3
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 69.8
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.5e-16 89.0 65 69.2
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.9e-16 88.6 63 68.3
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 9.5e-16 86.3 63 65.1
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 1.2e-15 85.9 56 69.6
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.2e-15 85.9 65 64.6
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 2.1e-15 85.1 63 66.7
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 2.1e-15 85.1 58 67.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 3.6e-15 84.3 63 65.1
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 4.7e-15 84.0 55 72.7
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.7e-15 84.0 81 54.3
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.7e-15 84.0 57 71.9
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 4.7e-15 84.0 58 69.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 6.2e-15 83.6 63 65.1
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 6.2e-15 83.6 63 63.5
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.0e-14 82.8 63 68.3
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 55 70.9
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 60 66.7
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 2.3e-14 81.6 63 63.5
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 5.2e-14 80.5 55 72.7
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 8.9e-14 79.7 57 63.2
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 1.2e-13 79.3 54 72.2
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 1.5e-13 79.0 55 67.3
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.5e-13 79.0 63 61.9
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 3.4e-13 77.8 79 54.4
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 7.5e-13 76.6 55 67.3
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 9.8e-13 76.3 55 67.3
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 2.2e-12 75.1 57 68.4
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 2.9e-12 74.7 55 67.3
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.4e-11 72.4 54 63.0
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 3.2e-11 71.2 54 64.8
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 5.4e-11 70.5 48 70.8
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.6e-10 68.9 48 66.7
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 6.0e-10 67.0 38 84.2
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 1.3e-09 65.9 111 38.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.3e-09 65.9 38 81.6
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 2.3e-09 65.1 48 66.7
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.5e-08 61.6 63 52.4
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 9.5e-08 59.7 48 60.4


User provided reference genes

Program Settings