Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.1e-167 590.5 293 100.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.9e-129 464.5 229 100.0
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 6.1e-118 427.9 229 90.4
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 8.0e-118 427.6 229 89.1
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.9e-117 425.2 227 89.4
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 3.9e-117 425.2 229 88.2
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-116 423.3 229 88.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.5e-116 423.3 229 89.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 2.6e-116 422.5 230 89.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 7.4e-116 421.0 229 88.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-114 416.4 227 88.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 7.0e-114 414.5 229 85.2
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 7.0e-114 414.5 229 85.2
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 7.0e-114 414.5 229 86.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.0e-113 412.9 229 84.7
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 9.4e-111 404.1 232 87.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 6.1e-110 401.4 229 84.7
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.4e-106 389.4 226 81.4
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.5e-105 385.2 231 82.7
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.8e-104 382.1 226 80.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.0e-104 381.7 229 82.1
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 8.5e-104 380.9 226 77.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.5e-103 380.2 227 80.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.7e-102 375.9 226 77.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.7e-102 375.9 227 79.3
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.6e-102 375.6 226 79.2
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.1e-102 374.8 218 78.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.0e-101 374.0 226 78.3
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-101 374.0 219 80.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-101 373.6 228 79.4
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.3e-101 372.9 229 77.7
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.0e-101 372.1 228 78.5
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.2e-101 371.7 229 77.3
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.8e-101 371.3 221 79.2
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 6.8e-101 371.3 228 78.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.5e-100 370.2 227 78.4
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.0e-100 369.8 219 79.5
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.0e-100 369.8 227 78.4
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.7e-100 368.2 219 79.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.7e-100 368.2 233 72.1
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 7.5e-100 367.9 227 76.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.3e-99 367.1 226 76.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.3e-99 367.1 227 78.9
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.7e-99 366.7 226 77.9
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.3e-99 364.8 227 77.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.1e-98 364.0 227 77.5
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.1e-98 362.5 233 73.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.1e-98 362.1 234 75.2
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.1e-98 362.1 224 77.2
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 4.1e-98 362.1 227 74.9
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 7.0e-98 361.3 221 76.5
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.6e-97 360.1 248 72.2
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.6e-97 360.1 227 74.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.0e-97 359.8 229 75.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-97 359.0 229 74.7
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 4.5e-97 358.6 224 75.0
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.7e-97 357.8 235 73.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.0e-96 357.5 234 75.6
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-96 357.1 234 73.5
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.7e-96 356.7 224 77.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.8e-96 355.5 233 71.2
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.2e-95 352.1 226 74.3
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 9.5e-95 350.9 235 72.8
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.1e-94 349.7 233 71.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.8e-94 349.4 230 72.6
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.6e-94 349.0 234 70.5
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.6e-94 349.0 226 73.0
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 8.0e-94 347.8 226 71.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.3e-93 346.3 232 70.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.0e-93 345.9 234 70.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 4.0e-93 345.5 217 75.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.0e-93 345.5 224 75.0
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.2e-93 345.1 226 71.7
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.2e-92 344.0 234 71.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.2e-92 344.0 226 72.1
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.5e-92 343.6 234 69.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.5e-92 343.6 224 74.6
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.0e-92 343.2 230 70.9
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.0e-92 343.2 234 68.8
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.0e-92 343.2 224 74.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 3.4e-92 342.4 230 74.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 3.4e-92 342.4 230 74.8
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 5.7e-92 341.7 238 68.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 5.7e-92 341.7 221 71.9
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.7e-92 341.7 224 73.2
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-91 340.5 231 71.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.3e-91 340.5 229 70.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.2e-91 339.7 230 70.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.2e-91 339.7 231 71.0
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.8e-91 339.3 214 75.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 3.7e-91 339.0 231 70.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-90 337.4 215 75.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 4.1e-90 335.5 233 69.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 5.4e-90 335.1 214 72.4
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 5.4e-90 335.1 214 72.4
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.2e-90 334.3 227 70.0
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.6e-89 333.6 214 72.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.6e-89 333.6 222 71.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.6e-89 333.6 232 69.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 3.5e-89 332.4 227 71.4
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.5e-89 332.4 224 73.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.7e-88 330.1 231 71.4
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.7e-88 330.1 231 71.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-88 329.3 226 72.6
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.9e-88 329.3 269 62.1
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.9e-88 329.3 210 74.8
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.9e-88 328.9 225 69.3
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.6e-88 328.2 229 70.3
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 6.6e-88 328.2 234 70.9
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 4.3e-87 325.5 234 68.8
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 9.5e-87 324.3 225 70.2
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.8e-86 322.8 227 68.3
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 6.1e-86 321.6 226 69.5
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.4e-85 320.5 227 67.8
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.8e-85 320.1 229 69.4
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.1e-85 319.3 214 69.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.0e-85 318.9 234 68.4
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.2e-82 309.3 214 67.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.1e-79 300.8 232 63.4
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.3e-79 298.9 229 65.9
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.2e-78 297.4 178 80.9
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.1e-77 294.3 230 63.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 8.9e-77 291.2 219 62.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-76 289.3 174 78.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.2e-74 282.7 234 63.7
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.1e-74 282.3 180 75.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.0e-72 276.2 212 63.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.0e-72 276.2 232 62.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.1e-71 274.2 227 60.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 4.4e-68 262.3 223 55.2
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.3e-64 250.8 162 74.7
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 7.3e-63 245.0 159 72.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.6e-62 243.8 184 67.9
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 8.1e-62 241.5 157 71.3
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.2e-57 227.6 167 67.7
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 7.3e-55 218.4 225 49.8
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-53 213.8 134 77.6
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 3.1e-53 213.0 135 76.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 7.6e-52 208.4 186 59.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 7.6e-52 208.4 215 49.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.4e-50 203.4 186 55.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.2e-50 203.0 202 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.2e-49 201.1 202 52.5
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.6e-49 199.1 120 75.8
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.9e-42 177.2 95 87.4
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.6e-38 164.1 209 42.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 6.9e-37 158.7 99 71.7
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 9.0e-37 158.3 225 44.9
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.9e-35 153.3 152 51.3
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.9e-34 150.6 158 51.3
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.3e-27 127.9 217 37.3
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.5e-26 123.6 104 62.5
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 4.3e-23 112.8 90 60.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.7e-23 112.5 101 60.4
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.1e-21 108.2 202 31.2
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.0e-21 105.1 61 83.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.4e-20 103.2 60 83.3
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-20 103.2 60 83.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-20 103.2 61 82.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 8.5e-19 98.6 70 70.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.5e-18 97.1 67 70.1
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.1e-17 94.0 64 70.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-15 87.4 59 72.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.7e-14 84.3 107 38.3
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.9e-11 73.6 153 31.4
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.9e-09 65.5 47 72.3
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 7.9e-09 65.5 57 57.9
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.8e-08 64.3 39 71.8
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.3e-08 63.9 44 75.0
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 5.7e-07 59.3 45 68.9
Glyma.U031114 Glycine max HOM05D004213 ORTHO05D005091 2.8e-06 57.0 39 69.2
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.8e-06 57.0 44 65.9


User provided reference genes

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