Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2715.3 1372 100.0
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2399.8 1301 94.5
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2369.3 1301 92.8
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2368.6 1301 92.9
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2355.5 1301 92.5
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2354.7 1331 90.8
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2349.7 1301 92.1
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2337.4 1301 91.3
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2297.7 1301 90.8
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2179.4 1311 85.0
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2177.9 1310 83.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2174.8 1311 84.8
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2171.4 1310 84.4
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2170.6 1310 84.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2164.4 1310 84.4
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2162.1 1310 84.3
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2161.0 1311 83.8
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2160.2 1310 84.1
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1318 82.9
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2151.3 1311 83.8
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2144.4 1311 83.4
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2142.5 1310 83.3
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2140.2 1311 83.1
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2139.0 1311 83.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2131.7 1312 82.9
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2130.9 1322 82.3
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2129.8 1310 83.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2127.8 1311 82.7
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2127.1 1311 83.0
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2124.4 1311 82.7
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2117.8 1311 82.7
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2117.0 1312 82.4
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2109.7 1310 81.4
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2105.1 1307 81.6
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2102.8 1310 82.9
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2096.2 1327 81.4
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2093.9 1311 81.3
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2092.4 1312 80.9
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1309 80.9
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1307 81.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1327 81.2
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2091.2 1316 81.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2089.7 1307 80.9
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2088.9 1307 81.1
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2088.2 1299 82.0
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2087.0 1312 80.6
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2084.7 1311 80.7
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2081.2 1315 80.7
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2080.4 1312 80.4
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2079.7 1321 80.3
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2076.6 1307 80.5
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2075.4 1304 80.7
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2069.7 1311 79.2
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2055.0 1312 79.0
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1311 79.8
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2051.2 1311 79.1
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2049.6 1311 80.1
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2047.7 1311 78.7
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2047.7 1307 80.0
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2040.0 1313 79.1
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2037.7 1310 78.8
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2033.5 1310 79.3
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2025.0 1311 79.6
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2023.8 1312 78.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2021.9 1331 79.5
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2020.4 1310 78.4
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2011.9 1310 78.1
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2010.3 1304 77.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2005.3 1313 78.2
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1947.2 1563 67.8
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1932.5 1438 71.1
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1929.8 1239 78.5
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1877.8 1192 79.6
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1876.7 1310 74.7
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1860.9 1246 75.8
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1822.4 1316 70.9
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1798.9 1311 70.1
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1768.1 971 93.7
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1704.5 1332 68.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1694.1 919 92.8
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1587.4 978 83.2
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1585.9 959 83.0
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1537.3 1087 75.0
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1505.0 954 79.2
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1500.0 926 81.0
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1480.3 1230 64.0
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1460.3 928 79.3
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1455.3 926 78.9
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1449.5 1315 57.7
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1432.9 1197 63.8
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1426.0 1347 55.5
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1424.1 1313 56.4
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1420.2 836 84.8
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1395.9 927 76.1
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1392.1 1319 55.6
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1328.9 970 70.8
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1278.5 1323 51.5
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1258.8 936 67.9
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1081.2 706 79.3
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.5e-246 857.4 821 58.1
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-240 837.8 824 56.2
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 7.8e-224 781.9 502 81.1
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 3.2e-201 706.8 497 73.8
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 3.0e-191 673.7 457 77.5
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.1e-185 655.2 573 62.1
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 1.4e-177 628.2 332 93.7
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.3e-167 595.1 347 89.3
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.6e-165 588.2 340 90.0
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.9e-162 577.4 419 69.7
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 2.5e-161 574.3 347 86.2
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 4.2e-161 573.5 340 87.1
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-159 568.5 449 65.3
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 7.9e-152 542.7 341 83.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.1e-148 532.3 392 68.6
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.8e-148 531.6 347 80.7
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 6.1e-144 516.5 347 79.0
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 4.1e-140 503.8 301 83.1
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-134 485.7 662 41.4
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.9e-130 471.1 393 67.9
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 1.2e-128 465.7 274 88.0
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.8e-120 438.0 320 68.8
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 6.1e-120 436.8 408 58.8
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 4.1e-116 424.1 243 85.6
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 4.6e-115 420.6 263 84.8
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 2.5e-113 414.8 253 85.0
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.9e-106 391.0 336 63.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.8e-102 377.1 260 76.2
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 7.5e-102 376.7 255 81.2
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.1e-80 303.5 266 59.4
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.6e-72 279.3 166 81.3
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.8e-71 275.8 154 90.9
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.7e-67 261.9 420 41.4
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 7.9e-67 260.4 464 33.6
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 6.5e-61 240.7 134 88.8
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 3.3e-57 228.4 130 90.0
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 1.7e-53 216.1 131 81.7
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.1e-52 213.4 142 73.2
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.8e-48 198.7 119 79.0
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 3.1e-47 195.3 127 78.0
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-42 179.9 127 68.5
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 3.4e-38 165.2 123 69.9
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.8e-37 161.8 98 78.6
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 6.5e-37 161.0 161 52.8
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.5e-36 159.1 98 77.6
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 6.7e-34 151.0 128 65.6
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-33 150.2 113 64.6
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 9.7e-33 147.1 123 63.4
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.9e-28 132.9 95 63.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.7e-26 124.4 85 67.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.2e-22 113.6 65 81.5
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.2e-22 113.6 65 80.0
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 3.5e-22 112.1 130 51.5
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 5.9e-22 111.3 73 74.0
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.9e-20 106.3 63 76.2
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.1e-15 90.5 99 53.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 7.7e-14 84.3 54 75.9
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.3e-13 83.6 42 97.6
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.9e-08 65.1 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.0e-07 61.2 32 81.2


User provided reference genes

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