Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 0.0e+00 1449.9 717 100.0
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 0.0e+00 1305.4 718 89.6
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 0.0e+00 1291.2 718 87.9
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 0.0e+00 1252.3 719 85.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 0.0e+00 1203.0 717 80.9
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 0.0e+00 1201.4 715 82.5
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 0.0e+00 1163.7 731 77.8
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 0.0e+00 1152.9 718 78.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1150.6 722 76.9
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1145.2 722 76.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 0.0e+00 1122.5 719 76.9
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 0.0e+00 1083.2 643 81.5
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 8.0e-297 1023.5 725 68.1
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.7e-294 1014.6 724 68.8
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.9e-290 1002.3 707 68.0
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 9.5e-290 1000.0 726 66.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.7e-289 997.7 721 66.2
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 8.9e-288 993.4 722 68.0
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.2e-286 988.8 721 67.5
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.7e-286 988.0 722 67.7
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.4e-286 987.3 721 67.4
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.2e-285 984.9 724 65.3
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.2e-285 984.9 731 66.1
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 3.2e-285 984.9 726 65.6
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 7.8e-284 980.3 729 65.3
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 5.0e-283 977.6 721 67.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.2e-281 973.0 732 64.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.8e-281 971.8 732 64.8
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.1e-280 969.9 723 64.2
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.1e-280 969.9 733 63.8
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.7e-278 962.6 732 64.5
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.1e-277 959.9 730 63.7
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 9.2e-277 956.8 723 65.6
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 2.1e-276 955.7 715 63.6
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.5e-276 954.9 727 63.3
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.7e-275 952.6 724 64.2
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.5e-274 949.5 721 63.5
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.3e-274 948.0 721 63.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 5.6e-274 947.6 761 61.0
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.4e-272 942.2 725 63.6
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.0e-272 941.4 727 64.0
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.3e-270 936.4 763 60.9
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 3.2e-269 931.8 718 63.1
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.7e-267 926.0 720 63.2
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 6.6e-267 924.1 714 63.9
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.5e-266 922.9 742 61.2
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.9e-266 922.5 720 62.9
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.5e-266 922.2 723 62.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.2e-265 919.8 728 62.4
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.6e-265 919.5 728 61.7
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 2.1e-265 919.1 718 61.8
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 9.0e-264 913.7 728 61.3
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.2e-263 913.3 728 61.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 7.6e-263 910.6 721 60.6
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.3e-262 909.8 723 61.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.3e-262 909.8 719 63.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 6.4e-262 907.5 725 62.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.4e-261 906.4 718 61.6
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.4e-261 905.6 726 61.0
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 5.4e-261 904.4 729 61.5
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 9.3e-261 903.7 723 60.7
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.3e-259 899.0 786 58.1
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.5e-258 896.3 704 62.2
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.9e-258 896.0 671 65.3
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 2.5e-258 895.6 723 61.1
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.8e-257 891.3 723 60.9
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.4e-256 889.0 727 60.7
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.9e-254 882.1 728 59.5
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 6.2e-249 864.4 705 59.4
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.9e-246 855.5 728 59.1
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 3.5e-244 848.6 704 59.1
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.8e-235 819.7 718 57.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.1e-232 810.4 607 63.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.0e-231 806.2 668 60.6
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.3e-230 803.5 748 54.8
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.3e-230 803.5 719 55.2
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.9e-230 802.4 725 56.4
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.2e-228 797.0 605 63.3
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 7.9e-228 794.3 615 64.4
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 3.7e-225 785.4 607 61.6
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 8.2e-225 784.3 723 56.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.5e-223 780.0 734 55.4
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.2e-220 770.4 724 54.3
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.7e-217 760.0 634 59.9
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.1e-212 743.0 756 52.4
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 3.6e-212 742.3 731 51.3
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 6.1e-212 741.5 817 50.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.3e-209 731.5 495 69.3
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.1e-205 720.7 635 56.7
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.2e-197 692.2 617 58.7
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.5e-197 691.8 610 55.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-194 683.7 493 65.1
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.9e-189 666.8 725 49.2
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 3.4e-186 656.0 619 54.6
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.6e-183 647.1 454 66.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.7e-169 600.5 454 63.0
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.6e-167 594.0 526 58.4
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 8.9e-163 578.2 729 43.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 4.9e-161 572.4 730 44.1
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.0e-158 563.1 477 60.8
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 2.6e-154 550.1 607 47.3
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.9e-133 480.7 580 43.1
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 3.0e-126 456.8 439 52.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 7.6e-122 442.2 635 43.0
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.4e-115 421.4 839 33.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 9.4e-112 408.7 379 54.1
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-109 401.7 539 39.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 3.4e-106 390.2 346 55.8
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.5e-105 386.0 479 42.6
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-104 385.2 289 65.1
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.5e-96 356.3 467 41.3
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.0e-87 325.9 225 66.7
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.4e-78 298.5 226 67.3
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 9.8e-61 239.2 665 29.8
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.4e-60 236.5 188 60.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 6.6e-57 226.5 301 42.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.8e-55 221.1 125 74.4
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 8.1e-55 219.5 244 44.3
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.1e-50 204.9 321 34.9
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.5e-48 196.1 144 63.2
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.8e-45 186.8 126 67.5
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-42 179.1 189 55.6
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 7.3e-40 169.9 126 64.3
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-32 145.6 118 54.2
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.0e-30 137.5 101 62.4
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 6.9e-30 136.7 105 61.9
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.2e-27 127.5 169 45.0
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 6.6e-25 120.2 131 47.3
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 5.6e-24 117.1 127 52.0
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.3e-23 115.9 66 75.8
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 3.8e-20 104.4 81 69.1
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 4.9e-20 104.0 73 69.9
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 8.7e-17 93.2 285 27.4
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 6.2e-15 87.0 61 60.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.1e-14 86.3 91 51.6
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 3.8e-12 77.8 77 58.4
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 5.1e-09 67.4 47 68.1
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.1e-08 66.2 102 40.2
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.5e-08 65.1 54 59.3
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 7.4e-08 63.5 44 59.1
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 2.8e-07 61.6 60 46.7
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 6.3e-07 60.5 49 57.1
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.4e-06 58.5 45 60.0


User provided reference genes

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