Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 7.8e-169 597.0 303 100.0
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.3e-163 579.7 303 96.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.9e-159 565.8 303 94.4
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 7.1e-154 547.4 303 90.1
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.7e-153 545.4 303 89.4
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.5e-153 545.0 303 89.4
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 7.9e-153 543.9 303 89.1
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.0e-152 542.0 303 90.1
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 5.1e-152 541.2 303 89.8
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 3.3e-151 538.5 303 88.1
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 5.6e-151 537.7 303 89.4
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.6e-150 536.2 303 87.8
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.3e-143 511.9 303 84.8
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 84.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.3e-143 511.5 300 85.3
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 9.6e-143 510.4 302 82.8
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 2.1e-142 509.2 303 84.5
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 4.8e-142 508.1 303 83.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 6.3e-142 507.7 300 83.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 8.2e-142 507.3 300 83.7
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 8.2e-142 507.3 300 83.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.1e-141 505.4 300 84.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 4.1e-141 505.0 303 84.8
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.1e-141 505.0 303 81.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 5.3e-141 504.6 316 80.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 83.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.2e-140 503.4 300 83.3
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 2.0e-140 502.7 303 81.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.0e-140 502.7 300 82.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 5.9e-140 501.1 303 82.2
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.6e-140 500.7 300 82.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-139 500.4 300 83.0
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.3e-139 500.0 303 83.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 82.7
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.7e-139 499.6 303 81.8
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 6.5e-139 497.7 303 82.5
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 2.5e-138 495.7 301 81.1
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 81.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-138 495.7 298 83.2
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 3.2e-138 495.4 303 82.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.2e-138 495.4 303 81.5
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.2e-138 495.0 303 80.9
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.2e-138 495.0 300 81.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.3e-138 493.8 297 83.2
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 81.2
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 83.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 82.2
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 2.7e-137 492.3 301 79.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 7.9e-137 490.7 302 79.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 80.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 79.9
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.8e-136 489.6 301 80.4
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.3e-136 489.2 302 79.1
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.0e-136 488.8 303 80.9
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 77.9
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 80.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 6.7e-136 487.6 300 78.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-135 486.9 298 82.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 79.9
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.5e-135 485.7 301 80.4
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 5.7e-135 484.6 301 78.4
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.4e-135 484.2 303 80.2
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.3e-134 483.4 300 78.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.3e-134 483.4 298 78.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.3e-134 483.4 301 81.4
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 79.1
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 78.3
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 77.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.7e-134 481.9 300 79.0
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 8.2e-134 480.7 300 78.0
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 8.2e-134 480.7 300 78.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.1e-133 480.3 302 78.8
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.8e-133 479.6 301 77.4
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 6.9e-133 477.6 301 80.1
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 6.9e-133 477.6 300 77.7
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 9.1e-133 477.2 303 77.9
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.0e-132 476.1 294 79.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 5.9e-132 474.6 305 77.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 2.2e-131 472.6 300 78.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 3.8e-131 471.9 300 76.3
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.0e-131 471.5 298 77.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.5e-131 470.7 303 77.6
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 3.2e-130 468.8 300 77.3
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 76.2
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 4.2e-130 468.4 303 75.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 9.4e-130 467.2 303 77.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.7e-129 465.7 303 76.6
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.7e-129 465.7 303 75.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 4.6e-129 464.9 303 76.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 76.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 76.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 76.8
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.4e-128 463.4 345 69.6
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 76.2
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.3e-128 462.6 303 75.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.3e-128 462.6 302 76.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 3.0e-128 462.2 298 76.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 76.2
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 6.7e-128 461.1 300 74.7
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 6.7e-128 461.1 321 72.6
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-127 460.3 303 76.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 9.7e-127 457.2 303 75.2
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.3e-126 456.8 301 75.4
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.3e-126 456.8 303 74.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 75.6
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 73.6
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.4e-125 452.6 309 74.4
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 74.9
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 74.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.0e-123 447.2 316 71.8
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.3e-123 446.8 300 74.3
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.2e-123 446.0 338 68.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 6.5e-123 444.5 303 72.9
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.7e-118 428.7 259 79.9
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 6.3e-118 427.9 247 85.0
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 8.2e-118 427.6 249 83.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.0e-115 420.6 294 70.4
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 7.2e-114 414.5 301 71.8
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-113 413.7 300 70.3
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.1e-113 412.9 298 66.1
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.0e-112 410.6 293 69.3
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 5.2e-112 408.3 312 69.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 5.2e-112 408.3 340 62.1
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 5.2e-112 408.3 288 69.4
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.4e-109 399.4 209 94.7
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 4.1e-109 398.7 303 68.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 3.5e-100 369.0 295 61.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.0e-99 367.5 305 61.6
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.2e-98 362.5 509 43.6
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.5e-98 361.7 300 65.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.2e-96 355.1 209 81.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 2.2e-94 349.7 291 57.0
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.1e-93 345.9 200 85.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.8e-91 339.0 220 76.8
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.4e-80 303.9 246 67.5
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.4e-77 292.0 245 64.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.0e-76 288.5 246 58.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 7.3e-74 281.6 271 50.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.6e-65 252.7 154 81.8
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 4.9e-54 215.7 281 42.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 7.8e-52 208.4 274 42.0
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.0e-48 196.1 195 56.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.2e-45 186.4 173 54.3
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.3e-38 164.5 199 51.8
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 7.9e-36 155.2 101 74.3
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.5e-34 151.0 84 83.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 5.5e-29 132.5 84 77.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 3.7e-25 119.8 234 30.8
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 4.5e-23 112.8 86 69.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-22 111.3 87 69.0
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.8e-22 109.8 70 75.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 4.2e-21 106.3 151 39.1
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 7.2e-21 105.5 83 65.1
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.7e-20 103.6 63 77.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.5e-18 97.8 161 38.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 7.7e-15 85.5 121 47.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.4e-07 60.1 54 61.1


User provided reference genes

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